Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_1567 |
Symbol | rnfE |
ID | 6145565 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | - |
Start bp | 1551331 |
End bp | 1552026 |
Gene Length | 696 bp |
Protein Length | 231 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 641616444 |
Product | electron transport complex RsxE subunit |
Protein accession | YP_001743622 |
Protein GI | 170680858 |
COG category | [C] Energy production and conversion |
COG ID | [COG4660] Predicted NADH:ubiquinone oxidoreductase, subunit RnfE |
TIGRFAM ID | [TIGR01948] electron transport complex, RnfABCDGE type, E subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.276457 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 64 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGCGAAA TTAAAGACGT TATTGTTCAG GGGTTGTGGA AAAACAACTC TGCGCTGGTC CAGCTGCTCG GCCTCTGTCC GCTATTGGCG GTCACGTCCA CTGCCACTAA CGCTCTGGGT TTAGGACTTG CGACTACGCT GGTACTGACG CTGACCAACT TGACCATTTC GACGCTGCGT CACTGGACGC CAGCCGAGAT CCGCATTCCC ATTTACGTGA TGATCATCGC CTCGGTGGTC AGCGCTGTAC AGATGCTGAT CAACGCCTAC GCCTTTGGCC TGTATCAATC ATTAGGGATT TTTATTCCGC TGATTGTCAC TAACTGTATC GTTGTGGGCC GCGCTGAAGC CTTCGCCGCC AAAAAAGGTC CGGCGCTTTC GGCACTGGAC GGCTTTTCAA TTGGTATGGG CGCAACCTGC GCCATGTGCG TGCTGGGTTC ACTACGCGAA ATTATCGGCA ATGGCACGTT GTTTGACGGT GCAGATGCGC TGTTAGGTAG CTGGGCAAAA GTATTACGCG TGGAAATTTT CCACACCGAC TCCCCTTTCC TGCTGGCGAT GCTGCCACCA GGTGCATTTA TTGGCCTGGG ACTGATGCTG GCAGGGAAAT ACCTGATTGA TGAAAGAATG AAAAAGCGCC GTACTGAAGC AGCTGCCGAA CGTGCATTGC CAAACGGTGA AACAGGGAAT GTCTGA
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Protein sequence | MSEIKDVIVQ GLWKNNSALV QLLGLCPLLA VTSTATNALG LGLATTLVLT LTNLTISTLR HWTPAEIRIP IYVMIIASVV SAVQMLINAY AFGLYQSLGI FIPLIVTNCI VVGRAEAFAA KKGPALSALD GFSIGMGATC AMCVLGSLRE IIGNGTLFDG ADALLGSWAK VLRVEIFHTD SPFLLAMLPP GAFIGLGLML AGKYLIDERM KKRRTEAAAE RALPNGETGN V
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