Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_1565 |
Symbol | tppB |
ID | 6146773 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | - |
Start bp | 1548584 |
End bp | 1550086 |
Gene Length | 1503 bp |
Protein Length | 500 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 641616442 |
Product | putative tripeptide transporter permease |
Protein accession | YP_001743620 |
Protein GI | 170682111 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG3104] Dipeptide/tripeptide permease |
TIGRFAM ID | [TIGR00924] amino acid/peptide transporter (Peptide:H+ symporter), bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 66 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTCCACTG CAAACCAAAA ACCAACTGAA AGCGTCAGTT TGAACGCTTT CAAACAACCG AAGGCGTTCT ATCTCATCTT CTCGATTGAG TTATGGGAAC GTTTTGGTTA TTACGGCCTA CAAGGAATTA TGGCTGTTTA CCTGGTTAAA CAACTGGGTA TGTCTGAAGC GGATTCAATC ACCCTTTTCT CTTCCTTTAG TGCCCTGGTT TATGGTCTGG TCGCTATCGG CGGCTGGTTA GGTGACAAGG TACTGGGTAC TAAACGCGTA ATTATGCTTG GCGCTATTGT GCTGGCGATT GGTTATGCTC TGGTTGCCTG GTCTGGTCAC GACGCCGGTA TCGTTTATAT GGGTATGGCG GCTATTGCGG TCGGTAACGG CCTGTTTAAA GCTAACCCGT CTTCTCTGCT TTCTACATGC TATGAGAAAA ACGACCCGCG TCTGGACGGT GCATTCACCA TGTACTACAT GTCCGTCAAC ATCGGCTCTT TCTTCTCTAT GATCGCCACC CCGTGGCTGG CCGCGAAATA CGGCTGGAGT GTTGCGTTTG CGTTGAGCGT TGTAGGCCTG CTGATCACTA TCGTTAACTT CGCCTTCTGC CAACGCTGGG TTAAACAGTA CGGTTCAAAA CCAGACTTCG AGCCTATCAA CTACCGTAAC CTGCTGCTGA CCATTATTGG TGTTGTGGCA CTGATCGCTA TCGCCACCTG GCTGCTGCAC AATCAGGAAG TTGCGCGTAT GGCGCTGGGC GTTGTTGCCT TCGGTATTGT GGTTATCTTC GGTAAAGAAG CCTTCGCGAT GAAAGGTGCT GCGCGTCGTA AAATGATCGT TGCCTTCATC CTGATGCTCG AAGCCATTAT CTTCTTCGTG CTGTACAGCC AGATGCCAAC GTCACTGAAC TTCTTTGCGA TTCGTAACGT TGAGCACTCC ATTCTGGGTC TGGCCGTAGA ACCTGAGCAG TATCAGGCAC TGAACCCGTT CTGGATCATC ATCGGTAGTC CGATTCTGGC CGCTATCTAT AACAAGATGG GCGATACCCT GCCGATGCCA ACCAAGTTTG CAATCGGCAT GGTGATGTGT TCTGGTGCGT TCCTGATTCT GCCGCTGGGT GCGAAATTCG CGTCTGACGC TGGTATCGTG TCTGTAAGCT GGCTGGTCGC GAGCTATGGC CTGCAGAGTA TCGGGGAACT GATGATCTCT GGTCTGGGTC TGGCAATGGT CGCACAACTC GTTCCGCAGC GTCTGATGGG CTTCATTATG GGTAGCTGGT TCCTGACCAC TGCCGGTGCA AACCTGATTG GTGGTTATGT TGCGGGTATG ATGGCTGTGC CGGATAACGT TACCGATCCG CTGATGTCAC TGGAAGTCTA TGGTCGCGTA TTCTTGCAGA TTGGTGTCGC TACTGCCGTT ATTGCAGTAC TGATGCTGCT GACCGCGCCG AAACTGCACC GCATGACGCA GGATGACGCT GCAGACAAAG CGGCGAAAGC TGCTGTAGCG TAA
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Protein sequence | MSTANQKPTE SVSLNAFKQP KAFYLIFSIE LWERFGYYGL QGIMAVYLVK QLGMSEADSI TLFSSFSALV YGLVAIGGWL GDKVLGTKRV IMLGAIVLAI GYALVAWSGH DAGIVYMGMA AIAVGNGLFK ANPSSLLSTC YEKNDPRLDG AFTMYYMSVN IGSFFSMIAT PWLAAKYGWS VAFALSVVGL LITIVNFAFC QRWVKQYGSK PDFEPINYRN LLLTIIGVVA LIAIATWLLH NQEVARMALG VVAFGIVVIF GKEAFAMKGA ARRKMIVAFI LMLEAIIFFV LYSQMPTSLN FFAIRNVEHS ILGLAVEPEQ YQALNPFWII IGSPILAAIY NKMGDTLPMP TKFAIGMVMC SGAFLILPLG AKFASDAGIV SVSWLVASYG LQSIGELMIS GLGLAMVAQL VPQRLMGFIM GSWFLTTAGA NLIGGYVAGM MAVPDNVTDP LMSLEVYGRV FLQIGVATAV IAVLMLLTAP KLHRMTQDDA ADKAAKAAVA
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