| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1543 |
|---|
| Symbol | |
|---|
| ID | 6142903 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 1527593 |
|---|
| End bp | 1528420 |
|---|
| Gene Length | 828 bp |
|---|
| Protein Length | 275 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641616420 |
|---|
| Product | NlpC/P60 family protein |
|---|
| Protein accession | YP_001743598 |
|---|
| Protein GI | 170683187 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0791] Cell wall-associated hydrolases (invasion-associated proteins) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 0.179042 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCGCGGA TAAACCGTAT TTCGATCACG CTCTGTGCTT TACTTTTTAC CACCCTGCCT
TTAACGCCTA TGGCCCATGC TTCAAAGCAA GCCAGGGAGA GTTCTGCTAC TACTCATATC
ACCAAAAAAG CAGATAAAAA GAAAAGCACG GCAACCACCA AAAAGACCCA GAAAGCCAGC
CAGAAAACAG CGAAAAAAGC CGCCAGTAAA AGTACGATCA AAAGCAAAAC CGCTTCTTCC
GTTAAAAAAT CTTCCATTAC CGCTTCTAAA AACGCCAAAA CTCGCAGCAA ACACGCCGTC
AATAAAACGG CCTCAGCCAA CTTTACCGAA AAGTGTACCA AACGTAAGGG CTATAAATCG
CATTGTGTGA AAGTCAAAAA TGCCGCGTCA GGAACCCTTG CCGACGCGCA CAAAGCGAAG
GTGCAAAAAG CCACGAAAGT GGCAATGAAT AAACTGATGC AGCAAATTGG TAAGCCATAT
CGTTGGGGCG GCAGCTCACC GCGTACCGGT TTTGATTGCA GCGGCCTGGT TTATTACGCT
TATAAAGATT TGGTGAAAAT TCGTATTCCG CGTACGGCGA ATGAAATGTA TCACCTGCGA
GATGCAGCGC CAATCGAACG TAGTGAACTG AAAAACGGCG ACCTGGTCTT TTTCCGTACT
CAGGGACGCG GTACAGCCGA TCATGTCGGC GTATATGTCG GCAACGGCAA ATTTATTCAG
TCACCGCGTA CGGGTCAGGA AATTCAAATC ACTTCTCTCA GTGAAGACTA CTGGCAGCGC
CACTATGTTG GCGCTCGCCG GGTAATGACC CCAAAAACAC TTCGCTAA
|
|---|
| Protein sequence | MARINRISIT LCALLFTTLP LTPMAHASKQ ARESSATTHI TKKADKKKST ATTKKTQKAS
QKTAKKAASK STIKSKTASS VKKSSITASK NAKTRSKHAV NKTASANFTE KCTKRKGYKS
HCVKVKNAAS GTLADAHKAK VQKATKVAMN KLMQQIGKPY RWGGSSPRTG FDCSGLVYYA
YKDLVKIRIP RTANEMYHLR DAAPIERSEL KNGDLVFFRT QGRGTADHVG VYVGNGKFIQ
SPRTGQEIQI TSLSEDYWQR HYVGARRVMT PKTLR
|
|---|
| |