| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1359 |
|---|
| Symbol | |
|---|
| ID | 6146574 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 1348444 |
|---|
| End bp | 1349817 |
|---|
| Gene Length | 1374 bp |
|---|
| Protein Length | 457 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641616237 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001743417 |
|---|
| Protein GI | 170680826 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.000544866 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.0171999 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAAAAG TTCAGGCCGA CGGCCTGCCA TTGCCCCAGC GATACGGTGC GATATTAACC
ATTGTGATTG GTATTTCGAT GGCTGTCCTT GACGGCGCAA TCGCCAACGT CGCCCTGCCA
ACAATCGCCA CGGACCTTCA TGCCACGCCA GCCAGTTCCA TCTGGGTAGT GAACGCCTAT
CAAATCGCCA TTGTCATCTC CCTGCTCTCA TTTTCGTTTC TGGGCGATAT GTTTGGCTAT
CGACGTATTT ATAAATGCGG TCTGGTCGTT TTTCTGTTGT CTTCACTGTT CTGCGCCCTT
TCTGATTCGC TGCAAATGCT CACCCTTGCG CGTGTCATAC AAGGTTTCGG CGGTGCAGCG
TTGATGAGCG TTAATACCGC ACTTATCCGC CTGATCTATC CACAACGTTT TCTGGGTAGA
GGGATGGGCA TAAACTCGTT TATTGTTGCC GTCTCTTCTG CTGCCGGGCC GACAATTGCT
GCAGCAATCC TCTCCATCGC ATCCTGGAAA TGGTTATTTT TAATCAACGT ACCGTTGGGT
ATTATCGCCC TGCTTCTGGC GATGCGTTTT CTGCCACCCA ATGGTTCTCG CGCCAGTAAA
CCCCGTTTCG ACCTGCCCAG CGCCGTGATG AACGCGTTAA CCTTCGGCCT GCTTATTACT
GCATTGAGTG GTTTCGCTCA GAGGCAATCG CTGACATTGA TTGGTGCGGA ACTGGTGGTA
ATGGTTGTCG TTGGTATTTT CTTTATTCGC CGCCAGCTTT CTCTTCCCGT ACCGCTGCTA
CCGGTGGATT TACTGCGTAT CCCGCTGTTT TCACTTTCTA TTTGCACATC TGTTTGCTCT
TTCTGCGCAC AAATGCTGGC AATGGTTTCC CTTCCCTTTT ACCTGCAAAC CGTGCTCGGG
CGTAGTGAAG TCGAAACAGG TTTACTTCTG ACACCGTGGC CGTTAGCAAC AATGGTGATG
GCTCCACTGG CAGGCTATTT GATTGAACGC GTACATGCAG GATTGCTGGG TGCTTTAGGG
TTATTCATCA TGGCTGCGGG GCTTTTTTCC CTGGTTCTGC TGCCAGCGTC ACCTGCGGAT
ATCAATATTA TCTGGCCGAT GATCTTATGT GGTGCTGGAT TTGGCTTGTT CCAGTCACCC
AATAACCACA CCATTATTAC CTCCGCTCCT CGCGAACGTA GCGGTGGAGC CAGTGGCATG
TTAGGGACGG CTCGTCTTCT GGGTCAGAGT AGCGGCGCGG CTCTGGTAGC GCTGATGCTA
AATCAGTTTG GTGATAATGG TACGCACGTC TCGCTGATGG CTGCGGCTAT TCTGGCGGTG
ATTGCAGCCT GTGTCAGTGG TTTACGTATC ACTCAGCCAC GATCCATGGC ATAA
|
|---|
| Protein sequence | MPKVQADGLP LPQRYGAILT IVIGISMAVL DGAIANVALP TIATDLHATP ASSIWVVNAY
QIAIVISLLS FSFLGDMFGY RRIYKCGLVV FLLSSLFCAL SDSLQMLTLA RVIQGFGGAA
LMSVNTALIR LIYPQRFLGR GMGINSFIVA VSSAAGPTIA AAILSIASWK WLFLINVPLG
IIALLLAMRF LPPNGSRASK PRFDLPSAVM NALTFGLLIT ALSGFAQRQS LTLIGAELVV
MVVVGIFFIR RQLSLPVPLL PVDLLRIPLF SLSICTSVCS FCAQMLAMVS LPFYLQTVLG
RSEVETGLLL TPWPLATMVM APLAGYLIER VHAGLLGALG LFIMAAGLFS LVLLPASPAD
INIIWPMILC GAGFGLFQSP NNHTIITSAP RERSGGASGM LGTARLLGQS SGAALVALML
NQFGDNGTHV SLMAAAILAV IAACVSGLRI TQPRSMA
|
|---|
| |