| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1254 |
|---|
| Symbol | amyA |
|---|
| ID | 6142793 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 1251734 |
|---|
| End bp | 1253221 |
|---|
| Gene Length | 1488 bp |
|---|
| Protein Length | 495 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 641616132 |
|---|
| Product | cytoplasmic alpha-amylase |
|---|
| Protein accession | YP_001743315 |
|---|
| Protein GI | 170679614 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 0.345137 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTAATC CCACGCTGTT ACAATGTTTT CACTGGTATT ACCCGGAAGG CGGTAAGCTC
TGGCCTGAAC TGGCCGAGCG CGCCGACGGT TTTAATGATA TTGGTATCAA TATGGTCTGG
TTGCCGCCCG CCTATAAAGG CGCATCGGGC GGGTATTCGG TCGGCTACGA CTCCTATGAT
TTATTTGATT TAGGCGAGTT TGATCAGAAA GGCAGCATCC CTACTAAATA TGGCGATAAA
GCACAACTGC TGGCCGCCAT TGACGCCCTG AAACGTAATG ACATTGCGGT GCTGTTGGAC
GTGGTAGTCA ACCACAAAAT GGGCGCGGAT GAAAAAGAAG CTATTCGCGT GCAGCGTGTA
AATGCTGACG ACCGTACGCA AATTGATGAA GAAATCATTG AGTGCGAAGG CTGGACGCGT
TACACCTTCC CCGCCCGTGC CGGGCAATAC TCACAGTTTA TCTGGGATTT CAAATGTTTT
AGCGGTATCG ACCATATCGA AAACCCTGAT GAAGATGGCA TATTTAAAAT TGTTAACGAC
TACACCGGCG AAGGCTGGAA CGATCAGGTT GATGATGAAT TAGGTAATTT CGATTATCTG
ATGGGCGAGA ATATCGATTT TCGCAATCAT GCCGTGACGG AAGAGATTAA ATACTGGGCG
CGCTGGGTGA TGGAACAAAC GCAATGCGAC GGTTTTCGTC TTGATGCGGT CAAACATATT
CCGGCGTGGT TTTATAAAGA GTGGATCGAA CACGTACAGG AAGTTGCGCC AAAGCCGCTG
TTTATTGTGG CGGAGTACTG GTCGCATGAA GTTGATAAGC TGCAAACGTA TATTGATCAG
GTGGAAGGCA AAACCATGCT GTTCGATGCG CCGCTGCAGA TGAAATTCCA TGAAGCATCG
CGCATGGGAC GCGACTACGA CATGACGCAG ATTTTCACTG GGACGCTGGT GGAAGCCGAT
CCTTTTCACG CCGTAACCCT CGTTGCCAAC CATGACACCC AACCGTTGCA AGCCCTCGAA
GCGCCAGTCG AACCGTGGTT TAAACCGCTG GCGTATGCTC TAATTTTGTT GCGGGAAAAT
GGCGTTCCTT CGGTATTCTA TCCGGACCTC TACGGTGCGC ATTACGAAGA TGTCGGTGGT
GACGGGCAAA CCTATCCGAT AGATATGCCA ATAATCGAAC AGCTTGATGA GTTAATTCTC
GCCCGTCAGC GTTTCGCCCA CGGTGTACAG ACGTTATTTT TCGACCATCC GAACTGCATT
GCCTTTAGCC GCAGTGGCAC TGACGAATAT CCCGGCTGCG TGGTGGTCAT GTCGAACGGG
GATGATGGCG AAAAAACCAT TCACCTGGGA GAGAATTACG GCAATAAAAC CTGGCGTGAT
TTTCTTGGGA ACCGGCAAGA GAGTGTAGTA ACCGACGAAA ACGGCGAAGC GACCTTCTTT
TGCAACGGCG GCAGCGTTAG CGTGTGGGTT ATCGAAGAGG TGATTTAA
|
|---|
| Protein sequence | MRNPTLLQCF HWYYPEGGKL WPELAERADG FNDIGINMVW LPPAYKGASG GYSVGYDSYD
LFDLGEFDQK GSIPTKYGDK AQLLAAIDAL KRNDIAVLLD VVVNHKMGAD EKEAIRVQRV
NADDRTQIDE EIIECEGWTR YTFPARAGQY SQFIWDFKCF SGIDHIENPD EDGIFKIVND
YTGEGWNDQV DDELGNFDYL MGENIDFRNH AVTEEIKYWA RWVMEQTQCD GFRLDAVKHI
PAWFYKEWIE HVQEVAPKPL FIVAEYWSHE VDKLQTYIDQ VEGKTMLFDA PLQMKFHEAS
RMGRDYDMTQ IFTGTLVEAD PFHAVTLVAN HDTQPLQALE APVEPWFKPL AYALILLREN
GVPSVFYPDL YGAHYEDVGG DGQTYPIDMP IIEQLDELIL ARQRFAHGVQ TLFFDHPNCI
AFSRSGTDEY PGCVVVMSNG DDGEKTIHLG ENYGNKTWRD FLGNRQESVV TDENGEATFF
CNGGSVSVWV IEEVI
|
|---|
| |