| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1226 |
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| Symbol | vsr |
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| ID | 6145587 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 1228452 |
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| End bp | 1228922 |
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| Gene Length | 471 bp |
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| Protein Length | 156 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 641616103 |
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| Product | very short patch repair protein |
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| Protein accession | YP_001743286 |
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| Protein GI | 170683555 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG3727] DNA G:T-mismatch repair endonuclease |
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| TIGRFAM ID | [TIGR00632] DNA mismatch endonuclease Vsr |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.129783 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 0.848224 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGACG TTCACGATAA GGCCACTCGC AGCAAAAATA TGCGCGCGAT TGCCACGCGT
GATACGGCGA TAGAGAAGCG CCTCGCCAGT CTGTTAACCG GGCAGGGCCT GGCGTTTCGC
GTTCAGGACG CCAGTCTGCC CGGACGCCCG GATTTTGTCG TTGATGAATA TCGCTGCGTG
ATATTTACCC ACGGCTGCTT CTGGCATCAT CATCACTGCT ATCTGTTTAA AGTGCCTGCG
ACTCGAACCG AGTTCTGGCT GGAGAAGATA GGTAAAAATG TTGAGCGCGA TCGCCGCGAT
ATCAGTCGCT TGCAGGAACT CGGCTGGCGC GTATTGATTG TCTGGGAGTG CGCGTTACGT
GGGCGCGAGA AGCTGACGGA TGAAGCGCTT AGCGAGCGTC TGGAAGAGTG GATCTGCGGC
GAAGGTGCCA GCGCGCAGAT CGACACGCAG GGGATTCATT TACTCGCTTG A
|
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| Protein sequence | MADVHDKATR SKNMRAIATR DTAIEKRLAS LLTGQGLAFR VQDASLPGRP DFVVDEYRCV
IFTHGCFWHH HHCYLFKVPA TRTEFWLEKI GKNVERDRRD ISRLQELGWR VLIVWECALR
GREKLTDEAL SERLEEWICG EGASAQIDTQ GIHLLA
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