Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_1044 |
Symbol | |
ID | 6145564 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | + |
Start bp | 1064401 |
End bp | 1065330 |
Gene Length | 930 bp |
Protein Length | 309 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 641615931 |
Product | LysR family transcriptional regulator |
Protein accession | YP_001743123 |
Protein GI | 170680006 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 0.141419 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACCAC TGCTGGATGT GTTGATGATC CTCGATGCCT TAGAAAAAGA AGGCAGTTTT GCGGCGGCGT CGGCCAAACT CTACAAGACG CCGTCCGCTC TGAGTTACAC CGTTCACAAG CTGGAAAGCG ACCTTAATAT TCAATTGCTT GATCGTAGCG GTCACCGCGC TAAATTCACC CGCACCGGAA AAATGTTATT AGAGAAAGGG CGGGAAGTTC TGCATACCGT GCGGGAACTG GAAAAGCAGG CGATCAAACT GCATGAAGGC TGGGAAAACG AGCTGGTGAT TGGCGTGGAC GACACGTTTC CTTTTTCTCT GCTTGCGCCA CTGATTGAAG CTTTTTATCA ACATCATAGC GTGACGCGCC TGAAGTTTAT CAATGGCGTA CTCGGTGGTT CCTGGGATGC CCTGACTCAG GGGCGAGCGG ATATTATTGT TGGCGCGATG CATGAGCCAC CATCTTCCAG TGAATTTGGT TTCTCGCGGT TGGGCGATCT GGAACAAGTC TTTGCGGTCG CGCCTCATCA TCCGTTAGCC CAGGAAGAAG AGCCGTTAAA CCGTCGTATC ATTAAGCGAT ATCGGGCGAT TGTGGTGGGG GACACTGCGC AGGCAGGCGC TTCTACGGCC TCACAACTTC TCGACGAACA AGAAGCCATT ACCGTTTTCG ATTTTAAAAC CAAGCTGGAG CTGCAAATTA GCGGCCTCGG CTGCGGCTAT TTACCCCGTT ATCTGGCGCA ACGTTTTCTC GATAGTGGCG CGTTAATCGA GAAGAAAGTG GTCGCCCAAA CTCTCTTTGA ACCCGTCTGG ATTGGCTGGA ATGAACAGAC CGCAGGGCTT GCCAGCGGCT GGTGGCGGGA TGAAATTTTA GCAAATAGTG CGATCGCCGG TGTTTATGCA AAATCTGATG ACGGAAAATC AGCCATTTAA
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Protein sequence | MKPLLDVLMI LDALEKEGSF AAASAKLYKT PSALSYTVHK LESDLNIQLL DRSGHRAKFT RTGKMLLEKG REVLHTVREL EKQAIKLHEG WENELVIGVD DTFPFSLLAP LIEAFYQHHS VTRLKFINGV LGGSWDALTQ GRADIIVGAM HEPPSSSEFG FSRLGDLEQV FAVAPHHPLA QEEEPLNRRI IKRYRAIVVG DTAQAGASTA SQLLDEQEAI TVFDFKTKLE LQISGLGCGY LPRYLAQRFL DSGALIEKKV VAQTLFEPVW IGWNEQTAGL ASGWWRDEIL ANSAIAGVYA KSDDGKSAI
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