| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_0913 |
|---|
| Symbol | |
|---|
| ID | 6145239 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | + |
|---|
| Start bp | 921240 |
|---|
| End bp | 922157 |
|---|
| Gene Length | 918 bp |
|---|
| Protein Length | 305 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 641615801 |
|---|
| Product | quaternary amine ABC transporter periplasmic substrate-binding protein |
|---|
| Protein accession | YP_001742993 |
|---|
| Protein GI | 170683010 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1732] Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 0.768792 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCACTCT CAAAGGTCTG GGCAGGTTCA CTGGTTTTGT TGGCAGCCGT GAGCCTGCCG
CTGCACGCGG CTTCCCCCGT TAAAGTCGGT TCAAAAATCG ATACCGAAGG CGCGCTGCTC
GGCAATATCA TTTTGCAGGT GCTGGAAAGT CACGGCGTTC CTACGGTAAA TAAAGTGCAA
TTGGGAACGA CTCCCGTAGT GCGCGGGGCG ATCACTTCTG GTGAGCTGGA TATCTATCCG
GAATATACTG GCAATGGCGC GTTTTTCTTT AAAGATGAAA ACGATACGGC GTGGAAAAAT
GCCGGGCAAG GCTACGAGAA AGTCAAAAAG CTCGATGCAG AGCAAAACAA GTTAATCTGG
CTGACGCCTG CGCCTGCAAA TAACACCTGG ACCATCGCCG TGCGTCAGGA TGTGGCAGAG
AAAAACAAAC TCACTTCGCT TGCTGACCTG AGTCGTTATC TGCAAGAGGG CGGCACCTTC
AAACTGGCTG CCTCAGCAGA GTTTATCGAA CGCGCCGATG CGTTACCCGC CTTTGAAAAA
GCCTATGGCT TTAAGCTCGG TCAGGATCAG TTGCTGTCAC TGGCTGGTGG CGACACGGCG
GTGACGATCA AGGCCGCTGC CCAGCAAACA TCCGGCGTTA ATGCCGCAAT GGCTTACGGC
ACTGACGGTC CGGTCGCGGC GCTGGGGCTG CAAACCTTAA GCGATCCGCA AGGCGTTCAG
CCTATCTACG CGCCTGCACC AGTGGTGCGA GAGTCGGTGT TGAAAGAGTA TCCGCAAATG
GCACAGTGGC TACAGCCAGT CTTCGCCAGC CTCGATGAAA AAACATTACA GCAACTGAAT
GCCAGCATTG CCGTTGAAGG ACTGGATGCC AAAAAAGTGG CTGCCGACTA CCTGAAACAA
AAAGGGTGGA CGAAGTAA
|
|---|
| Protein sequence | MPLSKVWAGS LVLLAAVSLP LHAASPVKVG SKIDTEGALL GNIILQVLES HGVPTVNKVQ
LGTTPVVRGA ITSGELDIYP EYTGNGAFFF KDENDTAWKN AGQGYEKVKK LDAEQNKLIW
LTPAPANNTW TIAVRQDVAE KNKLTSLADL SRYLQEGGTF KLAASAEFIE RADALPAFEK
AYGFKLGQDQ LLSLAGGDTA VTIKAAAQQT SGVNAAMAYG TDGPVAALGL QTLSDPQGVQ
PIYAPAPVVR ESVLKEYPQM AQWLQPVFAS LDEKTLQQLN ASIAVEGLDA KKVAADYLKQ
KGWTK
|
|---|
| |