Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_0885 |
Symbol | potI |
ID | 6143439 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | + |
Start bp | 889716 |
End bp | 890561 |
Gene Length | 846 bp |
Protein Length | 281 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 641615773 |
Product | putrescine transporter subunit: membrane component of ABC superfamily |
Protein accession | YP_001742965 |
Protein GI | 170682279 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.110855 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 57 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAATAATT TACCGGTAGT TCGTTCGCCC TGGCGGATTG TGATTTTGCT GCTGGGCTTC ACCTTTCTCT ACGCGCCAAT GCTGATGCTG GTGATCTATT CATTCAACAG CTCGAAGCTG GTGACGGTGT GGGCCGGCTG GTCAACGCGC TGGTATGGCG AATTATTGCG CGATGACGCG ATGATGAGTG CGGTTGGTTT AAGCCTGACA ATTGCGGCCT GTGCGGCGAC GGCGGCGGCG ATCCTCGGGA CTATTGCGGC GGTGGTGCTG GTGCGCTTTG GCAGGTTTCG CGGATCAAAT GGCTTTGCCT TTATGATCAC CGCGCCGCTG GTGATGCCAG ATGTCATCAC AGGCTTGTCG CTGTTGTTGT TATTCGTCGC GCTTGCTCAT GCCATTGGCT GGCCTGCGGA CCGCGGTATG CTCACCATCT GGCTGGCGCA TGTCACTTTC TGTACGGCTT ATGTGGCAGT CGTTATTTCG TCGCGTCTGC GGGAACTGGA TAGCTCGATA GAAGAAGCAG CGATGGATCT CGGTGCGACG CCGCTGAAAG TGTTTTTCGT CATTACGCTA CCGATGATCA TGCCCGCGAT CATTTCTGGC TGGTTACTGG CTTTTACTTT GTCGCTTGAT GATCTGGTGA TCGCCAGCTT TGTTTCCGGG CCGGGAGCCA CCACGTTACC GATGCTGGTC TTTTCCAGCG TGCGGATGGG GGTGAATCCG GAAATCAACG CCCTGGCAAC ATTAATCCTC GGCGCGGTCG GAATTGTCGG ATTTATCGCC TGGTATCTGA TGGCGCGCGC AGAAAAACAG CGGATACGCG ATATCCAGCG TGCAAGACGT GGCTGA
|
Protein sequence | MNNLPVVRSP WRIVILLLGF TFLYAPMLML VIYSFNSSKL VTVWAGWSTR WYGELLRDDA MMSAVGLSLT IAACAATAAA ILGTIAAVVL VRFGRFRGSN GFAFMITAPL VMPDVITGLS LLLLFVALAH AIGWPADRGM LTIWLAHVTF CTAYVAVVIS SRLRELDSSI EEAAMDLGAT PLKVFFVITL PMIMPAIISG WLLAFTLSLD DLVIASFVSG PGATTLPMLV FSSVRMGVNP EINALATLIL GAVGIVGFIA WYLMARAEKQ RIRDIQRARR G
|
| |