Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_0484 |
Symbol | ppiD |
ID | 6145900 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | + |
Start bp | 490217 |
End bp | 492088 |
Gene Length | 1872 bp |
Protein Length | 623 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 641615378 |
Product | peptidyl-prolyl cis-trans isomerase (rotamase D) |
Protein accession | YP_001742585 |
Protein GI | 170681699 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0760] Parvulin-like peptidyl-prolyl isomerase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00718349 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 55 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGGACA GCTTACGCAC GGCTGCAAAC AGTCTCGTGC TCAAGATTAT TTTCGGTATC ATTATCGTGT CGTTCATATT GACCGGCGTG AGTGGTTACC TGATTGGCGG AGGCAATAAC TACGCCGCAA AAGTGAATGA CCAGGAAATC AGCCGTGGGC AGTTCGAGAA TGCCTTCAAC AGCGAGCGTA ATCGCATGCA GCAACAGCTG GGCGATCAAT ACTCTGAGCT TGCAGCGAAC GAAGGCTATA TGAAAACCCT GCGTCAACAG GTGCTGAATC GTCTGATCGA CGAGGCGCTT CTGGATCAGT ACGCTCGTGA GCTGAAACTG GGTATCAGTG ATGAGCAGGT TAAACAGGCG ATTTTCGCGA CCCCAGCCTT CCAGGTTGAC GGCAAATTTG ATAACAGCCG CTATAACGGT ATCCTCAACC AGATGGGGAT GACCGCCGAT CAGTACGCCC AGGCGCTACG TAACCAGCTC ACTACCCAAC AGCTGATTAA CGGCGTTGCC GGTACCGATT TTATGCTGAA AGGTGAAACC GACGAGCTGG CGGCACTGGT AGCTCAACAA CGCGTGGTAC GTGAAGCGAC TATCGATGTT AACGCGCTGG CGGCGAAGCA GCCTGTGACC GAACAGGAAA TTGCCAGCTA CTACGAACAA AACAAAAACA ATTTCATGAC GCCGGAACAA TTCCGCGTGA GTTACATCAA GCTGGATGCC GCAACGATGC AGCAACCGGT TAGCGATGCG GATATCCAGA GCTACTACGA TCAGCATCAG GATCAATTCA CCCAGCCGCA GCGTACCCGC TACAGCATCA TCCAGACCAA AACTGAAGAT GAAGCGAAAG CGGTACTTGA TGAGCTGAAT AAAGGCGGTG ATTTTGCTGC GTTAGCCAAA GAAAAATCTG CCGATATTAT CTCTGCCCGT AACGGCGGCG ATATGGGTTG GTTAGAAGAT GCCACTATCC CGGACGAACT GAAAAATGCT GGTCTGAAAG AAAAAGGCCA ACTCTCTGGT GTCATCAAAT CTTCGGTCGG TTTCCTGATT GTACGTCTGG ACGACATTCA GCCAGCGAAA GTGAAGTCGT TAGACGAAGT GCGTGACGAT GTCGCGGCGA AAGTGAAACA CGAAAAAGCC CTCGATGCGT ACTACGCACT GCAGCAGAAA GTGAGCGATG CAGCAAGCAA TGATACCGAG TCTCTGGCCG GTGCAGAGCA AGCTGCCGGC GTTAAAGCCA CTCAGACGGG TTGGTTCAGC AAAGATAACC TGCCGGAAGA GTTGAACTTC AAGCCGGTTG CTGACGCTAT CTTCAACGGC GGTCTGGTAG GTGAAAACGG TGCGCCGGGC ATCAACTCTG ACATCATCAC CGTAGACGGC GACCGCGCAT TCGTGCTGCG CATCAGCGAG CACAAACCGG AAGCGGTGAA ACCGTTGGCA GATGTTCAGG AACAAGTTAA GGCACTGGTT CAGCACAACA AAGCTGAACA ACAGGCGAAA GTGGATGCTG AGAAACTGCT GGTTGATTTG AAAGCCGGCA AAGGTGCGGA AGCTATGCAG GCTGCCGGTC TGAAATTTGG CGAGCCGAAA ACCTTAAGCC GTTCCGGTCG TGACCCGATT AGCCAGGCGG CGTTTGCACT GCCACTGCCA GCGAAAGACA AACCGAGCTA CGGTATGGCG ACCGATATGC AAGGTAATGT GGTTCTGCTG GCGCTGGACG AAGTGAAACA AGGTTCAATG CCGGAAGATC AGAAAAAAGC GATGGTGCAG GGTATCACCC AGAACAACGC ACAAATCGTC TTTGAAGCGC TGATGAGTAA CCTGCGTAAA GAGGCGAAAA TCAAAATTGG CGATGCGCTG GAACAGCAAT AA
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Protein sequence | MMDSLRTAAN SLVLKIIFGI IIVSFILTGV SGYLIGGGNN YAAKVNDQEI SRGQFENAFN SERNRMQQQL GDQYSELAAN EGYMKTLRQQ VLNRLIDEAL LDQYARELKL GISDEQVKQA IFATPAFQVD GKFDNSRYNG ILNQMGMTAD QYAQALRNQL TTQQLINGVA GTDFMLKGET DELAALVAQQ RVVREATIDV NALAAKQPVT EQEIASYYEQ NKNNFMTPEQ FRVSYIKLDA ATMQQPVSDA DIQSYYDQHQ DQFTQPQRTR YSIIQTKTED EAKAVLDELN KGGDFAALAK EKSADIISAR NGGDMGWLED ATIPDELKNA GLKEKGQLSG VIKSSVGFLI VRLDDIQPAK VKSLDEVRDD VAAKVKHEKA LDAYYALQQK VSDAASNDTE SLAGAEQAAG VKATQTGWFS KDNLPEELNF KPVADAIFNG GLVGENGAPG INSDIITVDG DRAFVLRISE HKPEAVKPLA DVQEQVKALV QHNKAEQQAK VDAEKLLVDL KAGKGAEAMQ AAGLKFGEPK TLSRSGRDPI SQAAFALPLP AKDKPSYGMA TDMQGNVVLL ALDEVKQGSM PEDQKKAMVQ GITQNNAQIV FEALMSNLRK EAKIKIGDAL EQQ
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