| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_0441 |
|---|
| Symbol | secF |
|---|
| ID | 6144917 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | + |
|---|
| Start bp | 453427 |
|---|
| End bp | 454398 |
|---|
| Gene Length | 972 bp |
|---|
| Protein Length | 323 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641615337 |
|---|
| Product | preprotein translocase subunit SecF |
|---|
| Protein accession | YP_001742544 |
|---|
| Protein GI | 170684249 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0341] Preprotein translocase subunit SecF |
|---|
| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 56 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCACAGG AATATACTGT TGAACAACTA AACCACGGCC GTAAAGTCTA TGACTTTATG
CGCTGGGACT ACTGGGCTTT CGGCATCTCT GGTCTGCTGT TAATCGCCGC TATCGTTATT
ATGGGCGTGC GCGGCTTTAA CTGGGGGCTG GATTTCACCG GTGGTACGGT TATTGAAATT
ACGCTCGAAA AACCGGCTGA AATTGACGTA ATGCGTGATG CATTGCAAAA AGCCGGTTTT
GAAGAGCCGA TGCTGCAAAA CTTTGGTAGC AGCCACGACA TCATGGTCCG TATGCCGCCT
GCTGAAGGCG AAACCGGCGG TCAGGTGCTG GGCAGCCAGG TTCTGAAGGT GATTAACGAA
TCCACCAATC AGAATGCGGC AGTGAAGCGT ATTGAGTTCG TCGGGCCGAG CGTGGGGGCA
GACCTTGCGC AAACCGGTGC GATGGCGTTG ATGGCGGCGC TGCTGTCTAT CCTCGTGTAC
GTAGGTTTCC GCTTTGAGTG GCGACTGGCG GCAGGGGTTG TTATTGCGCT GGCGCACGAC
GTTATCATTA CGCTGGGTAT TTTGTCGTTA TTCCATATCG AGATTGACCT GACCATTGTG
GCATCGTTGA TGTCAGTTAT CGGTTACTCG CTTAACGACA GTATCGTGGT ATCGGACCGT
ATTCGTGAAA ACTTCCGCAA GATCCGTCGC GGTACGCCTT ACGAAATCTT TAACGTGTCC
TTGACCCAGA CGCTGCACCG TACCTTGATC ACATCCGGTA CTACCTTGAT GGTTATCCTG
ATGCTGTACC TCTTCGGTGG TCCGGTACTG GAAGGCTTCT CGCTGACCAT GCTTATCGGT
GTTTCCATCG GTACTGCATC TTCCATCTAC GTAGCATCGG CGCTGGCTCT GAAACTGGGT
ATGAAGCGCG AACACATGCT GCAGCAGAAA GTGGAAAAAG AAGGGGCGGA TCAGCCGTCA
ATTCTGCCTT AA
|
|---|
| Protein sequence | MAQEYTVEQL NHGRKVYDFM RWDYWAFGIS GLLLIAAIVI MGVRGFNWGL DFTGGTVIEI
TLEKPAEIDV MRDALQKAGF EEPMLQNFGS SHDIMVRMPP AEGETGGQVL GSQVLKVINE
STNQNAAVKR IEFVGPSVGA DLAQTGAMAL MAALLSILVY VGFRFEWRLA AGVVIALAHD
VIITLGILSL FHIEIDLTIV ASLMSVIGYS LNDSIVVSDR IRENFRKIRR GTPYEIFNVS
LTQTLHRTLI TSGTTLMVIL MLYLFGGPVL EGFSLTMLIG VSIGTASSIY VASALALKLG
MKREHMLQQK VEKEGADQPS ILP
|
|---|
| |