| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_0440 |
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| Symbol | secD |
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| ID | 6147515 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 451569 |
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| End bp | 453416 |
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| Gene Length | 1848 bp |
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| Protein Length | 615 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 641615336 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_001742543 |
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| Protein GI | 170680742 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 55 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTTAAACC GTTATCCTTT GTGGAAGTAC GTCATGCTGA TCGTGGTGAT TGTCATCGGT
CTGCTGTATG CGCTTCCCAA CCTGTTTGGT GAGGATCCGG CTGTTCAGAT CACTGGTGCG
CGCGGAGTCG CCGCCAGTGA GCAAACGCTG ATCCAGGTCC AGAAAACGTT ACAAGAAGAA
AAAATAACTG CTAAGTCTGT GGCACTGGAA GAGGGCGCTA TTCTTGCGCG CTTCGACTCC
ACTGACACCC AGCTGCGCGC TCGTGAAGCA TTAATGGGCG TTATGGGTGA CAAATACGTC
GTGGCGCTTA ACCTTGCCCC GGCAACGCCG CGCTGGCTGG CAGCTATTCA CGCTGAGCCG
ATGAAGCTCG GCCTTGACCT GCGTGGCGGC GTTCACTTCC TGATGGAAGT GGATATGGAC
ACCGCGCTTG GCAAACTCCA GGAACAAAAT ATCGATAGCC TGCGCAGCGA CCTGCGTGAA
AAGGGCATCC CGTATACCAC CGTTCGTAAA GAAAACAACT ACGGCCTGAG CATCACTTTC
CGCGATGCTA AAGCTCGTGA TGAAGCCATT GCGTATCTGA GCAAGCGCCA TCCGGACCTG
GTGATTAGCA GCCAGGGCAG CAACCAGCTG CGTGCGGTAA TGAGCGATGC TCGTCTGAGT
GAAGCGCGTG AATATGCGGT GCAGCAGAAC ATTAATATCC TGCGTAACCG TGTAAACCAA
CTTGGCGTGG CGGAGCCGGT GGTTCAGCGT CAGGGTGCTG ACCGTATCGT TGTTGAACTG
CCAGGTATTC AGGACACCGC GCGTGCGAAA GAGATTCTGG GTGCGACGGC AACGCTGGAA
TTCCGTCTGG TAAACACCAA CGTTGATCAG GCCGCTGCGG CATCCGGCCG CGTACCGGGC
GACTCTGAAG TGAAACAGAC CCGCGAAGGT CAGCCGGTTG TGCTGTACAA ACGCGTAATT
CTGACCGGTG ACCATATCAC CGACTCCACT TCCAGCCAGG ACGAATACAA CCAGCCGCAG
GTTAACATCT CGCTCGACAG CGCAGGTGGC AACATTATGT CTAACTTCAC CAAGGACAAC
ATCGGCAAAC CGATGGCGAC CCTGTTTGTG GAGTACAAAG ACAGCGGCAA GAAAGATGCT
AACGGTCGTG CGGTTCTGGT GAAACAGGAA GAGGTGATTA ACATCGCTAA CATCCAGTCT
CGTCTGGGTA ACAGCTTCCG TATCACCGGC ATCAACAACC CGAACGAAGC CCGTCAGCTG
TCACTGCTGC TGCGTGCCGG TGCGTTGATC GCGCCGATTC AGATTGTTGA AGAACGTACA
ATTGGCCCGA CCCTGGGTAT GCAGAACATT GAGCAGGGGC TGGAGGCTTG CCTTGCCGGT
CTGCTGGTTT CTATTCTGTT CATGATCATC TTCTATAAGA AGTTTGGTCT GATTGCGACC
AGTGCTCTGA TTGCCAACTT GATCTTGATC GTCGGTATTA TGTCGCTGTT GCCAGGCGCA
ACGCTGAGTA TGCCAGGTAT CGCGGGTATC GTCTTAACCC TTGCGGTAGC GGTCGACGCG
AACGTACTGA TCAACGAACG TATTAAAGAA GAGTTGAGCA ACGGACGTAC TGTTCAACAG
GCAATTGATG AAGGTTATCG TGGCGCATTC AGTTCCATCT TCGATGCGAA CATCACCACG
CTGATTAAAG TCATCATCCT GTACGCAGTG GGTACCGGGG CAATTAAAGG GTTCGCGATT
ACTACCGGTA TCGGTGTGGC GACGTCGATG TTTACCGCGA TTGTCGGTAC GCGTGCCATC
GTAAACCTGC TATATGGCGG CAAGCGCGTC AAGAAGCTGT CAATCTGA
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| Protein sequence | MLNRYPLWKY VMLIVVIVIG LLYALPNLFG EDPAVQITGA RGVAASEQTL IQVQKTLQEE
KITAKSVALE EGAILARFDS TDTQLRAREA LMGVMGDKYV VALNLAPATP RWLAAIHAEP
MKLGLDLRGG VHFLMEVDMD TALGKLQEQN IDSLRSDLRE KGIPYTTVRK ENNYGLSITF
RDAKARDEAI AYLSKRHPDL VISSQGSNQL RAVMSDARLS EAREYAVQQN INILRNRVNQ
LGVAEPVVQR QGADRIVVEL PGIQDTARAK EILGATATLE FRLVNTNVDQ AAAASGRVPG
DSEVKQTREG QPVVLYKRVI LTGDHITDST SSQDEYNQPQ VNISLDSAGG NIMSNFTKDN
IGKPMATLFV EYKDSGKKDA NGRAVLVKQE EVINIANIQS RLGNSFRITG INNPNEARQL
SLLLRAGALI APIQIVEERT IGPTLGMQNI EQGLEACLAG LLVSILFMII FYKKFGLIAT
SALIANLILI VGIMSLLPGA TLSMPGIAGI VLTLAVAVDA NVLINERIKE ELSNGRTVQQ
AIDEGYRGAF SSIFDANITT LIKVIILYAV GTGAIKGFAI TTGIGVATSM FTAIVGTRAI
VNLLYGGKRV KKLSI
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