Gene EcSMS35_0305 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcSMS35_0305 
Symbol 
ID6146180 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli SMS-3-5 
KingdomBacteria 
Replicon accessionNC_010498 
Strand
Start bp315387 
End bp316133 
Gene Length747 bp 
Protein Length248 aa 
Translation table11 
GC content53% 
IMG OID641615202 
ProductIS911 transposase orfB 
Protein accessionYP_001742410 
Protein GI170683982 
COG category[L] Replication, recombination and repair 
COG ID[COG2801] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0472068 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.00100252 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
TTGTGCAGCG AAATACGCCG GGCATGGAAC CAGAGCCGGG GCTCTGCAGG CGCGCGCACG 
CTGGCTGAAA TGCTGACCCA AAACGGCGTC CCGATGAGCC GTTATCGTGC CGGACGGCTG
ATGAAATACC TGAACCTGAG CAGTTGTCAG CCCGGAAAAC ATCAATACAA AAATGCCTGT
CAGGAGCATA CGTGTTTGCC GAATCTGCTC GAGCGTCAGT TCGCTGTACC GGAGCCAGAC
AGGGTATGGT GCGGAGATAT TACGTATATC TGGGCAGGAA ATCGCTGGTG CTATCTGGCG
GTCGTCATGG ATCTTTTTGC CCGCAGGGTT ATCGGCTGGA GCCTGTCAGC GAATGCCGAT
ACTGCACTGA TAAGCAGTGC CTTGCGGATG GCGTATGAGG TGCGTGGTCA GCCGCGGGAC
GTCATGTTCC ATAGCGACCA GGGAAGTCAG TATACAGGAC TGAAATATCA ACAGCTTCTC
TGGCGTTACA GGATAAAGCA AAGTGTCAGC CGACGGGGAA ACTGCTGGGA TAACAGTCCT
ATGGAACGCT TCTTCCGCAG TCTGAAAACA GAATGGGTGC CGACGGATGG TTACGTAGGC
AAGGACGAGG CCCGGCAACA AATTAGCGGT TATATCCTGA ATTATTACAA TAGCGTCAGG
CCTCACCATT ACAACGGTGG GTTGACGCCG GAAGAATCAG AGAACAGATA CCGTTTTTAC
TGTAAAACCG TGGCCAATAT TACTTGA
 
Protein sequence
MCSEIRRAWN QSRGSAGART LAEMLTQNGV PMSRYRAGRL MKYLNLSSCQ PGKHQYKNAC 
QEHTCLPNLL ERQFAVPEPD RVWCGDITYI WAGNRWCYLA VVMDLFARRV IGWSLSANAD
TALISSALRM AYEVRGQPRD VMFHSDQGSQ YTGLKYQQLL WRYRIKQSVS RRGNCWDNSP
MERFFRSLKT EWVPTDGYVG KDEARQQISG YILNYYNSVR PHHYNGGLTP EESENRYRFY
CKTVANIT