| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_0239 |
|---|
| Symbol | |
|---|
| ID | 6143372 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | + |
|---|
| Start bp | 253652 |
|---|
| End bp | 254401 |
|---|
| Gene Length | 750 bp |
|---|
| Protein Length | 249 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641615137 |
|---|
| Product | NlpC/P60 family protein |
|---|
| Protein accession | YP_001742346 |
|---|
| Protein GI | 170683259 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0791] Cell wall-associated hydrolases (invasion-associated proteins) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 60 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTTGC CGTCGATTCC CTCTTTTGTG TTGTCGGGAT TATTGTTGCT TTGCTTGCCG
TTTTCTTCAT TTGCCAGCGC CACCACATCA CATATCTCTT TCAGCTACGC CGCCCGCCAG
CGGATGCAAA ACCGTGCGCG TTTATTAAAA CAGTACCAAA CTCATCTGAA AAAGCAGGCC
GGCTATATTG TGGAAGGCAA TGCCGAAAGC AGAAAGGCGC TGCGCCAGCA CAACCGCGAA
CAGATAAAAC AGCATCCAGA ATGGTTTCCT GCGCCGCTCA AGGCGAGTGA CAGACGCTGG
CAGGCGCTGG CGGAGAACAA CCATTTCTTA AGCAGCGACC ATCTACACAA CATCACCGAA
GTGGCGATTC ACCGCCTGGA GCAGCAGCTT GGCAAGCCTT ATGTCTGGGG CGGCACGCGG
CCCGATAAAG GCTTCGACTG TAGCGGGTTG GTTTTTTATG CCTACAACAA GATCCTTGAG
GCGAAGCTCC CGCGCACAGC CAATGAGATG TATCACTACC ATCGGGCAAC GATTGTGGCG
AACAACGACC TGCGCCGGGG AGATTTGCTG TTTTTCCATA TTCACAGCCG CGAGATAGCC
GATCATATGG GGGTGTATCT GGGAGACGGT CAGTTTATCG AGTCACCACG TACCGGCGAA
ACCATTCGGA TAAGCCGGTT AGCTGAACCT TTCTGGCAGG ATCATTTTTT AGGCGCGCGG
CGGATTTTGA CGGAAGAGAC GATTTTGTAG
|
|---|
| Protein sequence | MSLPSIPSFV LSGLLLLCLP FSSFASATTS HISFSYAARQ RMQNRARLLK QYQTHLKKQA
GYIVEGNAES RKALRQHNRE QIKQHPEWFP APLKASDRRW QALAENNHFL SSDHLHNITE
VAIHRLEQQL GKPYVWGGTR PDKGFDCSGL VFYAYNKILE AKLPRTANEM YHYHRATIVA
NNDLRRGDLL FFHIHSREIA DHMGVYLGDG QFIESPRTGE TIRISRLAEP FWQDHFLGAR
RILTEETIL
|
|---|
| |