Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_0184 |
Symbol | dxr |
ID | 6142607 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | + |
Start bp | 202703 |
End bp | 203899 |
Gene Length | 1197 bp |
Protein Length | 398 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 641615085 |
Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
Protein accession | YP_001742301 |
Protein GI | 170683853 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
TIGRFAM ID | [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.103209 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 61 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGCAAC TCACCATTCT GGGCTCGACC GGCTCGATTG GTTGCAGCAC GCTGGACGTG GTGCGCCATA ATCCCGAACA CTTCCGCGTA GTTGCGCTGG TGGCAGGCAA AAATGTCACT CGCATGGTAG AACAGTGCCT GGAATTCTCT CCCCGCTATG CCGTAATGGA CGATGAAGCG AGTGCGAAAC TTCTTAAAAC GATGCTACAG CAACAGGGTA GCCGCACCGA AGTCTTAAGT GGGCAACAAG CCGCTTGCGA TATGGCAGCG CTTGAGGATG TTGATCAGGT GATGGCAGCC ATTGTTGGCG CTGCTGGGCT GTTACCTACG CTTGCTGCGA TCCGCGCGGG TAAAACCATT TTGCTGGCCA ATAAAGAATC ACTGGTTACC TGCGGACGTC TGTTTATGGA CGCCGTAAAG CAGAGCAAAG CGCAATTGTT ACCGGTCGAT AGCGAACATA ACGCCATTTT TCAGAGTTTA CCGCAACCTA TCCAGCATAA TCTGGGATAC GCTGACCTTG AGCAAAATGG CGTGGTGTCC ATTTTACTTA CCGGGTCTGG TGGCCCTTTC CGTGAGACGC CATTGCGCGA TTTGGCAACA ATGACGCCGG ATCAAGCCTG CCGTCATCCG AACTGGTCGA TGGGGCGTAA AATTTCTGTC GATTCGGCTA CCATGATGAA TAAAGGTCTG GAATACATTG AAGCGCGTTG GCTGTTTAAC GCCAGCGCCA GCCAGATGGA AGTGCTGATT CACCCGCAGT CAGTGATTCA CTCAATGGTG CGCTATCAGG ACGGCAGTGT TCTGGCGCAG CTGGGGGAAC CGGATATGCG TACGCCAATT GCCCACACCA TGGCATGGCC GAATCGCGTG AACTCTGGCG TGAAGCCGCT CGATTTTTGC AAACTAAGTG CGTTGACATT TGCCGCACCG GATTATGATC GTTATCCATG CCTGAAACTG GCGATGGAGG CGTTCGAACA AGGCCAGGCA GCGACGACAG CATTGAATGC CGCAAACGAA ATCACCGTTG CTGCTTTTCT TGCGCAACAA ATCCGCTTTA CGGATATCGC CGCGTTGAAT TTATCCGTAC TGGAAAAAAT GGATATGCGC GAACCACAAT GTGTGGACGA TGTGTTATCT GTTGATGCGA ACGCGCGTGA AGTCGCCAGA AAAGAGGTGA TGCGTCTCGC AAGCTGA
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Protein sequence | MKQLTILGST GSIGCSTLDV VRHNPEHFRV VALVAGKNVT RMVEQCLEFS PRYAVMDDEA SAKLLKTMLQ QQGSRTEVLS GQQAACDMAA LEDVDQVMAA IVGAAGLLPT LAAIRAGKTI LLANKESLVT CGRLFMDAVK QSKAQLLPVD SEHNAIFQSL PQPIQHNLGY ADLEQNGVVS ILLTGSGGPF RETPLRDLAT MTPDQACRHP NWSMGRKISV DSATMMNKGL EYIEARWLFN ASASQMEVLI HPQSVIHSMV RYQDGSVLAQ LGEPDMRTPI AHTMAWPNRV NSGVKPLDFC KLSALTFAAP DYDRYPCLKL AMEAFEQGQA ATTALNAANE ITVAAFLAQQ IRFTDIAALN LSVLEKMDMR EPQCVDDVLS VDANAREVAR KEVMRLAS
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