Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_0019 |
Symbol | |
ID | 6145809 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | - |
Start bp | 22139 |
End bp | 24178 |
Gene Length | 2040 bp |
Protein Length | 679 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 641614920 |
Product | glycosy hydrolase family protein |
Protein accession | YP_001742136 |
Protein GI | 170681287 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1501] Alpha-glucosidases, family 31 of glycosyl hydrolases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0278482 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 58 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCGTTTA TTAAGCAAGA TCCCCACCGT CTGGTCTGGC AACAAGACGA TCGTTATCTC TGGATTGAAG CCTGGGGCGA AAACAGCTTA CGCGTGCGAA GCGGCCGCCA TTTACCGGTA ATGCGCAATG AAAACTGGGC GTTAACTCAG GATCCTGGCG ATGCTGTCGC TCATATCACC TGGGATGAAA AACAGGCAAC GCTGAGAAAT GGTAAAATCA CTGCCATCGT AAATCTTCAG GGCCAGCTCT CTTTCTGGCG TAATGATGAT AAATGCCTGC TGCAAGAGTT CTGGCGTCAA CGTGGCGAAA TTGGTGAAGA TGAGTCAGCA CACGGCCAAT ATGTGAGCGC TCTTAATCTA CAGGCCCGTG AATTCAAGCC TATTCCTGGC GGGAAATTTA CGATTAAGGC ACGATTTGAA GCCAACGATG GCGAGAAACT CTTTGGCATG GGTCAGTATC AGCAACCAAA CCTGGATTTA AAAGGTTGCA TGCTGGAGCT GGCACAACGT AACTCGCAGG CTTCTGTTCC CTTCCTGCTA TCAAATCAGG GTTATGGTTT TCTGTGGAAT AACCCAGCAA TTGGCCGCGT CACCTTCGCG CAAAACGGTA CGGAATGGGT AGCAGAAGTC AGTGAACAAC TGGACTACTG GATCACTGCG GGCGATACTC CGGCTGAGAT CAGTGAAGCC TATGCACGAG TAACCGGTAC GCCACCGATG ATGCCTGATT ACGCAATGGG GTTCTGGCAA TGCAAGCTTC GCTATCGTAA TCAACAAGAA TTGTTAGAAG TCGCACGCGG CTACAAGCAA CGCAATCTTC CGATCTCGGT GATTGTCATC GATTTCTTCC ATTGGCCGAA TCAGGGTGAC TGGATGTTCG ATCTGCGTGA CTGGCCCGAT CCCGATGCGA TGATCGCCGA ATTAAAAGAA ATGGGTATCG AACTGATGGT TTCATTCTGG CCTACCGTAG ATAACCGTAC CGAGAGTTAT CGGGAGATGA AAGAAAACGG CTGGCTAGTC CACACCGAGC GTGGTTTGCC TATCAATATG GATTTCCTTG GCAACACCAC GTTCTTTGAT GCGACACATC CTGGCGCACG GGAATATGTC TGGAACAAAG CCAAACGCAA TTATTACGAT AAAGGCGTGA AACTGTTCTG GCTGGATGAA GCCGAGCCAG AGTTCGGTGT TTACGATTAT GACAACTATC GTTACTACGC AGGGCCAGTG CTGGAAGTCG GTAATATCTA TCCGCGTATG TACGCCAAAA CGTTCTTCGA TGGCATGCAG GCAGCCGGAG AAAAGCAGGT GATCAATTTG CTACGCTGCG CCTGGGCCGG TAGTCAGAAA TATGGTGCCC TGGTGTGGTC AGGCGATATC CACTCCTCCT TCCGTTCTCT GCGCAATCAG TTTGCTGCGG GGCTGAACAT GGGAATTGCC GGGATCCCGT GGTGGACGAC GGATATTGGC GGTTTCCACG GTGGCAACAT ACATGATCCA AAATTTCATG AACTGCTTAT TCGCTGGTTC CAGTGGGGGG TATTCAGCCC AGTAATGCGT TTACATGGCA ACCGCGACCC GCAAGTTTTG CCTGAACAAC CCTATCGTGA TGGCATCGCA CAATGTCCGA CTGGCGCGCC GAATGAAGTC TGGAGCTATG GTGAAGAAAC CGGTGAAATT CTCACTTCCT GCCTGCAGTT GCGTGAGAAG CTGAAACCTT ATATCAGTAA AATTATGGCT GAGACGCACG AGAAGAACAG CCCGGTAATG CGCACGATGT TCTTTGAGTT TCCAGACCAG GCAGAAAGCT GGAATATTTA TGATCAGTAC TGCTTTGGCC CGGACCTTCT CGTTGCCCCT GTAATGCACG AAGGTACACG TTCACGTGAT GTCTGGTTGC CTGCCGGAGA GACATGGATC GATTTTTATA CCCATGAACA CTACGCGGGT GGGCAAAAGC TTCATCATTG CGCGCCGCTG CACCAGATAC CGGTATTCAT TCGTGAGAAA GGGAAATATC GCCAGTTATT ACCCGTTTAA
|
Protein sequence | MSFIKQDPHR LVWQQDDRYL WIEAWGENSL RVRSGRHLPV MRNENWALTQ DPGDAVAHIT WDEKQATLRN GKITAIVNLQ GQLSFWRNDD KCLLQEFWRQ RGEIGEDESA HGQYVSALNL QAREFKPIPG GKFTIKARFE ANDGEKLFGM GQYQQPNLDL KGCMLELAQR NSQASVPFLL SNQGYGFLWN NPAIGRVTFA QNGTEWVAEV SEQLDYWITA GDTPAEISEA YARVTGTPPM MPDYAMGFWQ CKLRYRNQQE LLEVARGYKQ RNLPISVIVI DFFHWPNQGD WMFDLRDWPD PDAMIAELKE MGIELMVSFW PTVDNRTESY REMKENGWLV HTERGLPINM DFLGNTTFFD ATHPGAREYV WNKAKRNYYD KGVKLFWLDE AEPEFGVYDY DNYRYYAGPV LEVGNIYPRM YAKTFFDGMQ AAGEKQVINL LRCAWAGSQK YGALVWSGDI HSSFRSLRNQ FAAGLNMGIA GIPWWTTDIG GFHGGNIHDP KFHELLIRWF QWGVFSPVMR LHGNRDPQVL PEQPYRDGIA QCPTGAPNEV WSYGEETGEI LTSCLQLREK LKPYISKIMA ETHEKNSPVM RTMFFEFPDQ AESWNIYDQY CFGPDLLVAP VMHEGTRSRD VWLPAGETWI DFYTHEHYAG GQKLHHCAPL HQIPVFIREK GKYRQLLPV
|
| |