Gene EcHS_A4540 details

Gene Information

• Locus tag: EcHS_A4540
• ID: 5593505
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli HS
• Kingdom: Bacteria
• Replicon accession: NC_009800
• Strand: +
• Start bp: 4548117
• End bp: 4548671
• Gene Length: 555 bp
• Protein Length: 184 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 640923636
• Product: type-1 fimbrial protein
• Protein accession: YP_001461076
• Protein GI: 157163758
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG3539] P pilus assembly protein, pilin FimA

Plasmid Coverage information

• Num covering plasmid clones: 30
• Plasmid unclonability p-value: 0.00344914
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAATTA AAACTCTGGC AATTGTTGTT CTGTCGGCTC TGTCCCTGAG TTCTACAGCG 
GCTCTGGCTG AAACTACACC CACGACGGTA AATGGTGGGA CCGTTCACTT TAAAGGGGAA 
GTTGTTAACG CCGCTTGCGC AGTTGATGCA GGCTCTGTTG ATCAAACCGT TCAGTTGGGC 
CAGGTTCGTA CCGCTAGTCT GAAGCAGACT GGAGCAACCA GCTCTGCTGT CGGTTTTAAC 
ATTCAGCTGA ATGATTGCGA TACCAGTGTT GCCACAAAAG CCGCTGTTGC CTTCTTGGGG 
ACTGCGATTG ACAGTGCTCA TCCTAAAGTA CTGGCTCTGC AGAGTTCAGC TGCGGGTAGC 
GCAACAAACG TTGGTGTGCA GATCCTGGAC AGAACGGGTG CTGCGCTGGC GCTGGACGGT 
GCGACATTTA GTTCAGAAAC AACCCTGAAT AACGGAACCA ACACCATTCC GTTCCAGGCG 
CGTTATTTTG CAACCGGTGC CGCAACCCCG GGTGCTGCTA ATGCGGATGC GACCTTCAAG 
GTTCAGTATC AATAA 

 

Protein sequence

MKIKTLAIVV LSALSLSSTA ALAETTPTTV NGGTVHFKGE VVNAACAVDA GSVDQTVQLG 
QVRTASLKQT GATSSAVGFN IQLNDCDTSV ATKAAVAFLG TAIDSAHPKV LALQSSAAGS 
ATNVGVQILD RTGAALALDG ATFSSETTLN NGTNTIPFQA RYFATGAATP GAANADATFK 
VQYQ