Gene EcHS_A4172 details

Gene Information

• Locus tag: EcHS_A4172
• Symbol: metB
• ID: 5591648
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli HS
• Kingdom: Bacteria
• Replicon accession: NC_009800
• Strand: +
• Start bp: 4157305
• End bp: 4158465
• Gene Length: 1161 bp
• Protein Length: 386 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 640923275
• Product: cystathionine gamma-synthase
• Protein accession: YP_001460734
• Protein GI: 157163416
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases
• TIGRFAM ID: [TIGR02080] O-succinylhomoserine (thiol)-lyase

Plasmid Coverage information

• Num covering plasmid clones: 55
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACGCGTA AACAGGCCAC CATCGCAGTG CGTAGCGGGT TAAATGACGA CGAACAGTAT 
GGTTGCGTTG TCCCACCGAT CCATCTTTCC AGCACCTATA ACTTTACCGG ATTTAATGAA 
CCGCGCGCGC ATGATTACTC GCGTCGCGGC AACCCAACGC GCGATGTGGT TCAGCGTGCG 
CTGGCAGAAC TGGAAGGTGG TGCCGGTGCA GTGCTCACCA ATACCGGCAT GTCAGCCATC 
CATCTGGTAA CCACCGTCTT TTTGAAACCT GGCGATTTGC TGGTTGCGCC GCACGACTGC 
TACGGCGGTA GCTATCGCCT GTTCGACAGC CTGGCGAAAC GTGGTTGCTA TCGCGTGTTG 
TTTGTTGATC AAGGCGATGA ACAGGCATTA CGGGCAGCGC TGGCAGAAAA ACCCAAACTG 
GTACTGGTAG AAAGCCCAAG TAATCCATTG TTACGCGTCG TGGATATTGC GAAAATCTGC 
CATCTGGCAA GGGAAGTCGG GGCGGTGAGC GTGGTGGATA ACACCTTCTT AAGCCCGGCA 
TTACAAAATC CGCTGGCATT AGGTGCCGAT CTGGTGTTGC ATTCATGCAC GAAATATCTG 
AACGGTCACT CAGACGTAGT GGCCGGCGTG GTGATTGCTA AAGACCCGGA CGTTGTCACT 
GAACTGGCCT GGTGGGCAAA CAATATTGGC GTGACGGGCG GCGCGTTTGA CAGCTATCTG 
CTGCTACGTG GGTTGCGAAC GCTGGTGCCG CGTATGGAGC TGGCGCAGCG TAACGCGCAG 
GCGATTGTGA AATATCTGCA AACCCAGCCG TTGGTGAAAA AACTGTATCA CCCGTCGCTG 
CCGGAAAATC AGGGGCATGA AATTGCCGCG CGCCAGCAAA AAGGCTTTGG CGCAATGTTG 
AGTTTTGAAC TGGATGGCGA TGAGCAGACG CTGCGTCGTT TCCTGGGCGG GCTGTCGTTG 
TTTACGCTGG CGGAATCATT AGGGGGAGTG GAAAGTTTAA TCTCTCACGC CGCAACCATG 
ACACATGCAG GCATGGCACC AGAAGCGCGT GCTGCCGCCG GGATCTCCGA GACGCTGCTG 
CGTATCTCCA CCGGTATTGA AGATGGCGAA GATTTAATTG CCGACCTGGA AAATGGCTTC 
CGGGCTGCAA ACAAGGGGTA A 

 

Protein sequence

MTRKQATIAV RSGLNDDEQY GCVVPPIHLS STYNFTGFNE PRAHDYSRRG NPTRDVVQRA 
LAELEGGAGA VLTNTGMSAI HLVTTVFLKP GDLLVAPHDC YGGSYRLFDS LAKRGCYRVL 
FVDQGDEQAL RAALAEKPKL VLVESPSNPL LRVVDIAKIC HLAREVGAVS VVDNTFLSPA 
LQNPLALGAD LVLHSCTKYL NGHSDVVAGV VIAKDPDVVT ELAWWANNIG VTGGAFDSYL 
LLRGLRTLVP RMELAQRNAQ AIVKYLQTQP LVKKLYHPSL PENQGHEIAA RQQKGFGAML 
SFELDGDEQT LRRFLGGLSL FTLAESLGGV ESLISHAATM THAGMAPEAR AAAGISETLL 
RISTGIEDGE DLIADLENGF RAANKG