Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcHS_A4034 |
Symbol | dapF |
ID | 5591756 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli HS |
Kingdom | Bacteria |
Replicon accession | NC_009800 |
Strand | + |
Start bp | 4025239 |
End bp | 4026063 |
Gene Length | 825 bp |
Protein Length | 274 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640923138 |
Product | diaminopimelate epimerase |
Protein accession | YP_001460604 |
Protein GI | 157163286 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0253] Diaminopimelate epimerase |
TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 51 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAGTTCT CGAAAATGCA TGGCCTTGGC AACGATTTTA TGGTCGTCGA CGCGGTAACG CAGAATGTCT TTTTTTCACC GGAGCTGATT CGTCGCCTGG CTGATCGGCA CCTGGGGGTA GGGTTTGACC AACTGCTGGT GGTTGAGCCG CCGTATGATC CTGAACTGGA TTTTCACTAT CGCATTTTCA ATGCTGATGG CAGTGAAGTG GCGCAGTGCG GCAACGGTGC GCGCTGCTTT GCCCGTTTTG TGCGTCTGAA AGGACTGACC AATAAGCGTG ATATCCGCGT CAGCACCGCC AACGGGCGGA TGGTTCTGAC CGTCACCGAT GATGATCTGG TCCGCGTAAA TATGGGCGAA CCCAACTTCG AACCTTCCGC CGTGCCGTTT CGCGCTAACA AAGCGGAAAA GACCTATATT ATGCGCGCCG CCGAGCAGAC AATCTTATGC GGCGTGGTGT CGATGGGAAA TCCGCATTGC GTGATTCAGG TCGATGATGT CGATACCGCG GCGGTAGAAA CGCTTGGTCC TGTTCTGGAA AGCCACGAGC GTTTTCCGGA GCGCGCCAAT ATCGGTTTTA TGCAAGTGGT TAAGCGCGAG CATATTCGTT TACGCGTTTA TGAGCGTGGG GCAGGAGAAA CCCAGGCCTG CGGCAGCGGC GCGTGTGCGG CGGTTGCAGT AGGGATTCAG CAAGGTTTGC TGGCCGAAGA AGTACGCGTG GAACTCCCCG GCGGTCGTCT TGATATCGCC TGGAAAGGTC CGGGTCACCC GTTATATATG ACTGGCCCGG CGGTACATGT CTACGACGGA TTTATTCATC TATGA
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Protein sequence | MQFSKMHGLG NDFMVVDAVT QNVFFSPELI RRLADRHLGV GFDQLLVVEP PYDPELDFHY RIFNADGSEV AQCGNGARCF ARFVRLKGLT NKRDIRVSTA NGRMVLTVTD DDLVRVNMGE PNFEPSAVPF RANKAEKTYI MRAAEQTILC GVVSMGNPHC VIQVDDVDTA AVETLGPVLE SHERFPERAN IGFMQVVKRE HIRLRVYERG AGETQACGSG ACAAVAVGIQ QGLLAEEVRV ELPGGRLDIA WKGPGHPLYM TGPAVHVYDG FIHL
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