| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A3442 |
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| Symbol | |
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| ID | 5594583 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli HS |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009800 |
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| Strand | - |
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| Start bp | 3444980 |
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| End bp | 3446920 |
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| Gene Length | 1941 bp |
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| Protein Length | 646 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640922560 |
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| Product | regulatory protein CsrD |
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| Protein accession | YP_001460048 |
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| Protein GI | 157162730 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00000000473717 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGATTAA CGACGAAATT TTCGGCCTTT GTTACGCTGC TCACCGGGTT AACAATTTTT
GTGACTTTGC TGGGCTGTTC GCTAAGTTTC TACAACGCCA TTCAGTATAA GTTTAGTCAT
CGCGTTCAGG CGGTGGCGAC GGCGATTGAT ACCCACCTTG TGTCGAATGA CTTCAGCGTA
TTAAGGCCAC AAATTACCGA ATTAATGATG TCGGCAGATA TCGTTCGTGT AGACCTGCTC
CATGGTGATA AACAGGTTTA TACCCTGGCC AGAAATGGTA GTTATCGTCC AGTTGGCTCC
AGCGATCTGT TTCGCGAACT GAGCGTTCCG TTGATAAAGC ATCCGGGGAT GTCGTTGCGT
CTGGTTTATC AGGATCCGAT GGGCAACTAT TTCCATTCGT TGATGACCAC CGCGCCGCTC
ACGGGGGCGA TTGGCTTTAT CATTGTTATG CTCTTCCTGG CGGTACGCTG GTTACAACGG
CAACTTGCCG GGCAAGAATT GCTGGAAACC CGGGCTACTC GTATCTTAAA CGGTGAGCGT
GGCTCTAATG TGTTGGGAAC CATCTATGAA TGGCCGCCCA GAACCAGCAG TGCGCTGGAT
ACGCTGCTTC GTGAAATTCA GAACGCACGC GAACAACACA GCCGTCTTGA TACGCTGATC
CGCTCTTATG CCGCCCAGGA CGTGAAAACC GGCCTCAATA ACCGACTCTT TTTCGATAAT
CAGTTAGCAA CGTTACTGGA AGATCAGGAG AAAGTAGGTA CCCACGGGAT CGTGATGATG
ATTCGTCTGC CGGATTTCAA TATGTTGAGC GATACCTGGG GGCACAGCCA GGTTGAAGAA
CAGTTCTTCA CTCTGACGAA TCTGCTGTCG ACATTTATGA TGCGCTACCC TGGCGCACTG
CTGGCGCGTT ACCACCGCAG TGATTTTGCT GCGCTGTTAC CGCACCGGAC GTTAAAAGAG
GCAGAGAGCA TCGCCGGTCA GTTAATCAAA GCCGTTGATA CCTTGCCGAA CAATAAAATG
CTCGATCGCG ACGATATGAT CCACATTGGT ATCTGCGCCT GGCGTAGTGG TCAGGATACC
GAGCAGGTAA TGGAACATGC AGAGTCTGCC ACGCGTAATG CGGGATTGCA GGGCGGCAAT
AGCTGGGCTA TTTACGATGA CTCGTTGCCT GAAAAAGGAC GCGGTAATGT TCGCTGGCGT
ACGCTTATCG AGCAAATGCT CAGTCGCGGC GGCCCGCGCC TTTATCAAAA ACCGGCGGTT
ACTCGCGAAG GTCAGGTTCA TCATCGCGAA CTCATGTGCC GCATCTTCGA TGGTAATGAA
GAGGTTAGCT CGGCGGAGTA TATGCCGATG GTCTTGCAGT TTGGCTTATC GGAAGAGTAT
GACCGTCTGC AAATCAGCCG TCTTATTCCA CTATTGCGTT ACTGGCCAGA GGAAAATCTG
GCGATTCAGG TTACCGTTGA GTCGCTGATT CGCCCGCGTT TTCAGCGTTG GCTGCGCGAT
ACGTTAATGC AATGTGAAAA ATCACAACGA AAACGCATAA TTATTGAACT TGCAGAGGCC
GATGTAGGTC AACATATCAG TCGTTTACAA CCTGTTATTC GTTTAGTGAA TGCTTTAGGG
GTACGGGTAG CCGTCAACCA GGCTGGTTTG ACGCTGGTAA GTACCAGTTG GATCAAAGAA
CTTAATGTTG AGTTACTCAA GCTCCATCCG GGGCTGGTCA GAAACATTGA GAAGCGAACG
GAGAACCAGC TGCTGGTTCA AAGCCTGGTG GAAGCCTGCT CCGGGACCAG CACCCAGGTT
TACGCCACCG GCGTGCGTTC GCGAAGCGAG TGGCAGACCC TGATTCAGCG CGGTGTTACA
GGCGGGCAAG GGGATTTTTT CGCGTCCTCA CAGCCACTTG ATACTAACGT GAAAAAATAT
TCACAAAGAT ACTCGGTTTA A
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| Protein sequence | MRLTTKFSAF VTLLTGLTIF VTLLGCSLSF YNAIQYKFSH RVQAVATAID THLVSNDFSV
LRPQITELMM SADIVRVDLL HGDKQVYTLA RNGSYRPVGS SDLFRELSVP LIKHPGMSLR
LVYQDPMGNY FHSLMTTAPL TGAIGFIIVM LFLAVRWLQR QLAGQELLET RATRILNGER
GSNVLGTIYE WPPRTSSALD TLLREIQNAR EQHSRLDTLI RSYAAQDVKT GLNNRLFFDN
QLATLLEDQE KVGTHGIVMM IRLPDFNMLS DTWGHSQVEE QFFTLTNLLS TFMMRYPGAL
LARYHRSDFA ALLPHRTLKE AESIAGQLIK AVDTLPNNKM LDRDDMIHIG ICAWRSGQDT
EQVMEHAESA TRNAGLQGGN SWAIYDDSLP EKGRGNVRWR TLIEQMLSRG GPRLYQKPAV
TREGQVHHRE LMCRIFDGNE EVSSAEYMPM VLQFGLSEEY DRLQISRLIP LLRYWPEENL
AIQVTVESLI RPRFQRWLRD TLMQCEKSQR KRIIIELAEA DVGQHISRLQ PVIRLVNALG
VRVAVNQAGL TLVSTSWIKE LNVELLKLHP GLVRNIEKRT ENQLLVQSLV EACSGTSTQV
YATGVRSRSE WQTLIQRGVT GGQGDFFASS QPLDTNVKKY SQRYSV
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