Gene EcHS_A3424 details

Gene Information

• Locus tag: EcHS_A3424
• Symbol: degS
• ID: 5592347
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli HS
• Kingdom: Bacteria
• Replicon accession: NC_009800
• Strand: +
• Start bp: 3425788
• End bp: 3426855
• Gene Length: 1068 bp
• Protein Length: 355 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 640922543
• Product: serine endoprotease
• Protein accession: YP_001460031
• Protein GI: 157162713
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
• TIGRFAM ID: [TIGR02038] periplasmic serine pepetdase DegS

Plasmid Coverage information

• Num covering plasmid clones: 35
• Plasmid unclonability p-value: 0.109706
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTTGTGA AGCTCTTACG TTCCGTTGCG ATTGGATTAA TTGTCGGCGC TATTCTGCTG 
GTTGCCATGC CTTCGCTGCG CAGCCTTAAC CCGCTTTCCA CTCCGCAATT TGACAGTACC 
GATGAGACGC CTGCCAGCTA TAATCTGGCG GTTCGCCGCG CCGCGCCAGC GGTGGTTAAC 
GTTTACAACC GTGGTTTGAA CACCAACTCT CACAACCAGC TTGAGATCCG CACCCTGGGA 
TCCGGTGTAA TCATGGATCA ACGCGGTTAT ATCATCACCA ATAAACACGT CATCAACGAC 
GCCGATCAGA TCATCGTCGC CTTACAGGAT GGACGTGTAT TTGAAGCATT GCTGGTGGGA 
TCTGACTCTC TAACCGATCT GGCGGTACTT AAAATTAATG CCACTGGCGG TTTACCTACC 
ATTCCAATTA ATGCACGTCG CGTACCGCAC ATTGGCGACG TAGTACTGGC GATCGGTAAC 
CCGTACAACC TCGGGCAGAC CATTACCCAG GGGATTATTA GTGCCACGGG TCGAATCGGT 
CTGAACCCGA CCGGGCGGCA AAACTTCCTC CAAACCGATG CTTCCATTAA CCACGGTAAC 
TCTGGCGGCG CGCTGGTGAA CTCGCTGGGC GAACTGATGG GCATTAATAC GCTGTCGTTT 
GATAAGAGTA ACGATGGCGA AACGCCGGAA GGTATCGGCT TTGCGATTCC TTTCCAGTTA 
GCAACCAAAA TTATGGATAA GCTGATCCGC GATGGTCGCG TGATCCGCGG CTACATTGGT 
ATCGGCGGAC GTGAGATCGC ACCACTGCAC GCGCAGGGCG GTGGTATAGA TCAACTGCAA 
GGGATCGTGG TTAATGAAGT GTCACCTGAC GGCCCGGCGG CGAATGCGGG TATTCAGGTC 
AACGATCTGA TTATTTCGGT GGATAACAAA CCGGCCATCT CTGCTCTGGA GACGATGGAT 
CAGGTGGCGG AAATTCGCCC TGGTTCGGTG ATCCCTGTAG TAGTGATGCG TGATGATAAG 
CAGTTAACGC TGCAGGTCAC CATTCAGGAA TATCCGGCAA CCAATTAA 

 

Protein sequence

MFVKLLRSVA IGLIVGAILL VAMPSLRSLN PLSTPQFDST DETPASYNLA VRRAAPAVVN 
VYNRGLNTNS HNQLEIRTLG SGVIMDQRGY IITNKHVIND ADQIIVALQD GRVFEALLVG 
SDSLTDLAVL KINATGGLPT IPINARRVPH IGDVVLAIGN PYNLGQTITQ GIISATGRIG 
LNPTGRQNFL QTDASINHGN SGGALVNSLG ELMGINTLSF DKSNDGETPE GIGFAIPFQL 
ATKIMDKLIR DGRVIRGYIG IGGREIAPLH AQGGGIDQLQ GIVVNEVSPD GPAANAGIQV 
NDLIISVDNK PAISALETMD QVAEIRPGSV IPVVVMRDDK QLTLQVTIQE YPATN