| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A3354 |
|---|
| Symbol | deaD |
|---|
| ID | 5591113 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli HS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009800 |
|---|
| Strand | - |
|---|
| Start bp | 3356897 |
|---|
| End bp | 3358852 |
|---|
| Gene Length | 1956 bp |
|---|
| Protein Length | 651 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640922472 |
|---|
| Product | ATP-dependent RNA helicase DeaD |
|---|
| Protein accession | YP_001459965 |
|---|
| Protein GI | 157162647 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 58 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCTGATCA ATTTCATGAT GAGTTATGTA GACTGGCCGC CATTAATTTT GAGGCACACG
TACTACATGG CTGAATTCGA AACCACTTTT GCAGATCTGG GCCTGAAGGC TCCTATCCTT
GAAGCCCTTA ACGATCTGGG TTACGAAAAA CCATCTCCAA TTCAGGCAGA GTGTATTCCA
CATCTGCTGA ATGGCCGCGA CGTTCTGGGT ATGGCCCAGA CGGGGAGCGG AAAAACTGCA
GCATTCTCTT TACCTCTGCT GCAGAATCTT GATCCTGAGC TGAAAGCACC ACAGATTCTG
GTGCTGGCAC CGACCCGCGA ACTGGCGGTA CAGGTTGCTG AAGCAATGAC GGATTTCTCT
AAACACATGC GCGGCGTAAA TGTGGTTGCC CTGTACGGCG GCCAGCGTTA TGACGTGCAA
TTACGCGCCC TGCGTCAGGG GCCGCAGATC GTTGTCGGTA CTCCGGGCCG TCTGCTGGAC
CACCTGAAAC GTGGCACTCT GGACCTCTCT AAACTGAGCG GTCTGGTTCT GGATGAAGCT
GACGAAATGC TGCGCATGGG CTTCATCGAA GACGTTGAAA CCATTATGGC GCAGATCCCG
GAAGGTCATC AGACCGCTCT GTTCTCTGCA ACCATGCCGG AAGCGATTCG TCGCATTACC
CGCCGCTTTA TGAAAGAGCC GCAGGAAGTG CGTATTCAGT CCAGCGTGAC TACCCGTCCT
GACATCAGCC AGAGCTACTG GACTGTGTGG GGTATGCGTA AAAACGAAGC ACTGGTACGT
TTCCTGGAAG CGGAAGATTT TGATGCGGCG ATTATCTTCG TTCGTACCAA AAACGCGACT
CTGGAAGTGG CTGAAGCTCT TGAGCGTAAC GGCTACAATA GCGCCGCGCT GAACGGTGAC
ATGAACCAGG CGCTGCGTGA GCAGACACTG GAACGCCTTA AAGACGGTCG TCTGGACATC
CTGATTGCGA CCGACGTTGC GGCCCGTGGC CTGGACGTTG AGCGTATCAG CCTGGTGGTT
AACTACGATA TCCCTATGGA TTCTGAGTCT TACGTTCACC GTATCGGTCG TACCGGTCGT
GCGGGTCGTG CTGGCCGCGC GCTGTTGTTC GTTGAGAACC GCGAGCGTCG TCTGCTGCGC
AACATTGAAC GTACTATGAA GCTGACTATT CCGGAAGTAG AACTGCCGAA CGCAGAACTG
CTGGGCAAAC GCCGTCTGGA AAAATTCGCC GCTAAAGTAC AGCAGCAGCT GGAAAGCAGC
GATCTGGATC AATACCGCGC ACTGCTGAGC AAAATTCAGC CGACTGCAGA AGGTGAAGAG
CTGGACCTCG AAACTCTGGC CGCCGCACTG CTGAAAATGG CACAGGGTGA ACGTACTCTG
ATCGTACCGC CAGATGCGCC GATGCGTCCG AAACGTGAAT TCCGTGACCG TGATGACCGT
GGTCCGCGCG ATCGTAACGA CCGTGGCCCG CGTGGTGACC GTGAAGATCG TCCGCGTCGT
GAACGTCGTG ATGTTGGCGA TATGCAGCTG TACCGCATTG AAGTGGGCCG CGATGATGGT
GTTGAAGTTC GTCATATCGT TGGTGCGATT GCTAACGAAG GCGACATCAG CAGCCGTTAC
ATTGGTAACA TCAAGCTGTT TGCTTCTCAC TCCACCATCG AACTGCCGAA AGGTATGCCG
GGTGAAGTGC TGCAACACTT TACGCGCACT CGCATTCTCA ACAAGCCGAT GAACATGCAG
TTACTGGGCG ATGCACAGCC GCATACTGGC GGTGAGCGTC GTGGCGGTGG TCGTGGTTTC
GGTGGCGAAC GTCGTGAAGG CGGTCGTAAC TTCAGCGGTG AACGCCGTGA AGGTGGTCGT
GGTGATGGTC GTCGTTTTAG CGGCGAACGT CGTGAAGGCC GCGCACCGCG TCGTGATGAC
TCTACCGGTC GTCGTCGTTT CGGTGGCGAT GCGTAA
|
|---|
| Protein sequence | MLINFMMSYV DWPPLILRHT YYMAEFETTF ADLGLKAPIL EALNDLGYEK PSPIQAECIP
HLLNGRDVLG MAQTGSGKTA AFSLPLLQNL DPELKAPQIL VLAPTRELAV QVAEAMTDFS
KHMRGVNVVA LYGGQRYDVQ LRALRQGPQI VVGTPGRLLD HLKRGTLDLS KLSGLVLDEA
DEMLRMGFIE DVETIMAQIP EGHQTALFSA TMPEAIRRIT RRFMKEPQEV RIQSSVTTRP
DISQSYWTVW GMRKNEALVR FLEAEDFDAA IIFVRTKNAT LEVAEALERN GYNSAALNGD
MNQALREQTL ERLKDGRLDI LIATDVAARG LDVERISLVV NYDIPMDSES YVHRIGRTGR
AGRAGRALLF VENRERRLLR NIERTMKLTI PEVELPNAEL LGKRRLEKFA AKVQQQLESS
DLDQYRALLS KIQPTAEGEE LDLETLAAAL LKMAQGERTL IVPPDAPMRP KREFRDRDDR
GPRDRNDRGP RGDREDRPRR ERRDVGDMQL YRIEVGRDDG VEVRHIVGAI ANEGDISSRY
IGNIKLFASH STIELPKGMP GEVLQHFTRT RILNKPMNMQ LLGDAQPHTG GERRGGGRGF
GGERREGGRN FSGERREGGR GDGRRFSGER REGRAPRRDD STGRRRFGGD A
|
|---|
| |