Gene EcHS_A3330 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcHS_A3330 
SymbolagaB 
ID5593957 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli HS 
KingdomBacteria 
Replicon accessionNC_009800 
Strand
Start bp3335095 
End bp3335571 
Gene Length477 bp 
Protein Length158 aa 
Translation table11 
GC content44% 
IMG OID640922448 
ProductPTS system N-acetylgalactosamine-specific transporter subunit IIB 
Protein accessionYP_001459941 
Protein GI157162623 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3444] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 
TIGRFAM ID[TIGR00854] PTS system, mannose/fructose/sorbose family, IIB component 


Plasmid Coverage information

Num covering plasmid clones47 
Plasmid unclonability p-value0.664112 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCAGTC CAAATATTCT CTTAACCCGT ATTGATAACC GTCTGGTTCA TGGCCAGGTT 
GGCGTGACCT GGACATCCAC CATCGGTGCA AATCTGCTGG TAGTCGTGGA TGATGTTGTC
GCTAACGATG ATATTCAACA GAAATTAATG GGTATTACCG CGGAAACCTA CGGCTTTGGC
ATTCGTTTCT TTACTATCGA AAAAACCATT AACGTCATCG GCAAAGCTGC ACCGCATCAG
AAGATCTTCC TGATTTGCCG TACGCCACAA ACGGTACGTA AATTGGTAGA AGGTGGCATT
GACCTGAAAG ATGTCAACGT CGGCAATATG CATTTCTCGG AAGGGAAAAA GCAAATCAGC
AGTAAAGTTT ATGTCGATGA CCAGGATCTC GCGGACTTAC GTTTTATTAA ACAACGTGGC
GTGAATGTTT TCATTCATGA CGTCCCTGGC GATCAAAAAG AACAAATCCC TGACTAA
 
Protein sequence
MSSPNILLTR IDNRLVHGQV GVTWTSTIGA NLLVVVDDVV ANDDIQQKLM GITAETYGFG 
IRFFTIEKTI NVIGKAAPHQ KIFLICRTPQ TVRKLVEGGI DLKDVNVGNM HFSEGKKQIS
SKVYVDDQDL ADLRFIKQRG VNVFIHDVPG DQKEQIPD