| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A3213 |
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| Symbol | tolC |
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| ID | 5592899 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli HS |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009800 |
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| Strand | + |
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| Start bp | 3222940 |
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| End bp | 3224427 |
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| Gene Length | 1488 bp |
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| Protein Length | 495 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640922331 |
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| Product | outer membrane channel protein |
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| Protein accession | YP_001459829 |
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| Protein GI | 157162511 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 0.00955114 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAATGA AGAAATTGCT CCCCATTCTT ATCGGCCTGA GCCTTTCTGG GTTCAGTTCG
TTGAGCCAGG CCGAGAACCT GATGCAAGTT TATCAGCAAG CACGCCTTAG TAACCCGGAA
TTGCGTAAGT CTGCCGCCGA TCGTGATGCT GCCTTTGAAA AAATTAATGA AGCGCGCAGT
CCATTACTGC CACAGCTAGG TTTAGGTGCA GATTACACCT ATAGCAACGG CTACCGCGAC
GCGAACGGCA TCAACTCTAA CGCGACCAGT GCGTCCTTGC AGTTAACTCA ATCCATTTTT
GATATGTCGA AATGGCGTGC GTTAACGCTG CAGGAAAAAG CAGCAGGGAT TCAGGACGTC
ACGTATCAGA CCGATCAGCA AACCTTGATC CTCAACACCG CGACCGCTTA TTTCAACGTG
TTGAATGCTA TTGACGTTCT TTCCTATACA CAGGCACAAA AAGAAGCGAT CTACCGTCAA
TTAGATCAAA CCACCCAACG TTTTAACGTG GGCCTGGTAG CGATCACCGA CGTGCAGAAC
GCCCGCGCAC AGTACGATAC CGTGCTGGCG AACGAAGTGA CCGCACGTAA TAACCTTGAT
AACGCGGTAG AGCAGCTGCG CCAGATCACC GGTAACTACT ATCCGGAACT GGCTGCGCTG
AATGTCGAAA ACTTTAAAAC CGACAAACCA CAGCCGGTTA ACGCGCTGCT GAAAGAAGCC
GAAAAACGCA ACCTGTCGCT GTTACAGGCA CGCTTGAGCC AGGACCTGGC GCGCGAGCAA
ATTCGCCAGG CGCAGGATGG TCACTTACCG ACTCTGGATT TAACGGCTTC TACCGGGATT
TCTGACACCT CTTATAGCGG TTCGAAAACC CGTGGTGCCG CTGGTACCCA GTATGACGAT
AGCAATATGG GCCAGAACAA AGTTGGCCTG AGCTTCTCGC TGCCGATTTA TCAGGGCGGA
ATGGTTAACT CGCAGGTGAA ACAGGCACAG TACAACTTTG TCGGTGCCAG CGAGCAACTG
GAAAGTGCCC ATCGTAGCGT CGTGCAGACC GTGCGTTCCT CCTTCAACAA CATTAATGCA
TCTATCAGTA GCATTAACGC CTACAAACAA GCCGTAGTTT CCGCTCAAAG CTCATTAGAC
GCGATGGAAG CGGGCTACTC GGTCGGTACG CGTACCATTG TTGATGTGTT GGATGCGACC
ACCACGTTGT ACAACGCCAA GCAAGAGCTG GCGAATGCGC GTTATAACTA CCTGATTAAT
CAGCTGAATA TTAAGTCAGC CCTGGGTACG TTGAACGAGC AGGATCTGCT GGCACTGAAC
AATGCGCTGA GCAAACCGGT TTCCACTAAT CCGGAAAACG TTGCCCCGCA AACGCCGGAA
CAGAATGCTA TTGCTGATGG TTATGCGCCT GATAGCCCGG CCCCCGTCGT TCAGCAAACA
TCCGCACGCA CTACCACCAG TAACGGTCAT AACCCTTTCC GTAACTGA
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| Protein sequence | MQMKKLLPIL IGLSLSGFSS LSQAENLMQV YQQARLSNPE LRKSAADRDA AFEKINEARS
PLLPQLGLGA DYTYSNGYRD ANGINSNATS ASLQLTQSIF DMSKWRALTL QEKAAGIQDV
TYQTDQQTLI LNTATAYFNV LNAIDVLSYT QAQKEAIYRQ LDQTTQRFNV GLVAITDVQN
ARAQYDTVLA NEVTARNNLD NAVEQLRQIT GNYYPELAAL NVENFKTDKP QPVNALLKEA
EKRNLSLLQA RLSQDLAREQ IRQAQDGHLP TLDLTASTGI SDTSYSGSKT RGAAGTQYDD
SNMGQNKVGL SFSLPIYQGG MVNSQVKQAQ YNFVGASEQL ESAHRSVVQT VRSSFNNINA
SISSINAYKQ AVVSAQSSLD AMEAGYSVGT RTIVDVLDAT TTLYNAKQEL ANARYNYLIN
QLNIKSALGT LNEQDLLALN NALSKPVSTN PENVAPQTPE QNAIADGYAP DSPAPVVQQT
SARTTTSNGH NPFRN
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