Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcHS_A3126 |
Symbol | speC |
ID | 5593852 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli HS |
Kingdom | Bacteria |
Replicon accession | NC_009800 |
Strand | - |
Start bp | 3135938 |
End bp | 3138073 |
Gene Length | 2136 bp |
Protein Length | 711 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 640922245 |
Product | ornithine decarboxylase |
Protein accession | YP_001459745 |
Protein GI | 157162427 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 49 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAATCAA TGAATATTGC CGCCAGTAGT GAACTGGTAT CCCGACTTTC TTCTCATCGT CGCGTGGTGG CGTTGGGAGA TACTGATTTT ACGGACGTCG CGGCAGTCGT CATTACCGCT GCGGATAGTC GCAGTGGCAT TCTTGCGTTG CTTAAGCGCA CCGGTTTTCA TCTACCGGTG TTTTTGTATT CCGAACATGC TGTAGAATTA CCTGCGGGCG TTACGGCGGT AATCAACGGC AACGAGCAGC AGTGGCTGGA GCTGGAATCC GCAGCCTGTC AGTATGAAGA GAATTTGCTG CCACCGTTTT ATGACACGCT GACGCAGTAC GTTGAGATGG GCAACAGCAC CTTTGCTTGC CCTGGACATC AACATGGTGC GTTCTTTAAA AAGCATCCTG CCGGACGCCA TTTTTACGAT TTCTTCGGTG AGAACGTCTT TCGCGCCGAT ATGTGTAATG CCGATGTGAA ACTGGGCGAT CTGCTTATTC ATGAAGGATC GGCGAAAGAT GCGCAGAAAT TCGCAGCCAA AGTCTTTCAT GCCGATAAAA CCTATTTTGT GCTGAACGGC ACATCGGCAG CGAATAAAGT GGTGACGAAT GCGCTGTTAA CGCGTGGCGA TCTGGTGCTC TTCGACCGTA ACAACCATAA GTCGAATCAT CACGGCGCGC TGATTCAGGC GGGGGCGACG CCGGTCTATC TGGAAGCTTC ACGCAACCCG TTTGGTTTCA TTGGCGGTAT TGATGCGCAC TGTTTTAATG AAGAGTATCT GCGCCAGCAA ATTCGCGACG TTGCGCCAGA AAAAGCCGAC CTGCCGCGCC CGTTTCGCCT GGCGATTATT CAGCTGGGAA CCTATGACGG CACTGTCTAT AACGCCCGTC AGGTGATCGA TACCGTTGGG CATCTGTGTG ATTACATTCT GTTTGATTCC GCGTGGGTCG GTTACGAACA ATTTATCCCG ATGATGGCGG ATAGCTCGCC GCTGCTATTA GAACTTAACG AAAACGATCC GGGGATCTTT GTGACTCAGT CGGTGCACAA ACAGCAGGCG GGATTCTCAC AGACGTCGCA GATCCATAAA AAAGATAACC ATATCCGCGG ACAGGCGCGT TTTTGCCCGC ATAAGCGGTT GAATAATGCC TTTATGCTCC ATGCTTCTAC CAGCCCGTTC TACCCGCTGT TTGCCGCCCT GGACGTTAAC GCCAAAATTC ATGAAGGGGA GAGTGGGCGT CGGCTGTGGG CTGAGTGCGT TGAGTTGGGT ATTGAGTCGC GCAAGGCTAT TCTTGCGCGC TGTAAGCTGT TCCGCCCGTT TATCCCGCCC GTTGTTGATG GCAAATTGTG GCAGGATTAT CCGACATCTG TGTTAGCCAG CGACCGCCGT TTTTTCAGTT TTGAGCCGGG GGCGAAGTGG CACGGCTTTG AAGGATATGC CGCGGATCAG TATTTTGTTG ATCCGTGCAA GCTGTTACTC ACTACACCAG GTATCGATGC CGAAACCGGC GAATATAGCG ACTTTGGCGT TCCGGCGACG ATTCTGGCGC ACTATCTGCG TGAGAACGGC ATTGTGCCGG AGAAGTGCGA TCTCAACTCC ATTCTGTTTT TATTAACTCC GGCGGAAAGC CACGAGAAGC TGGCACAACT GGTGGCGATG CTGGCGCAAT TTGAACAGCA TATTGAGGAT GACTCGCCGC TGGTTGAGGT GTTGCCGAGC GTTTATAACA AGTATCCGGT GCGCTATCGC GACTACACCC TGCGCCAGTT GTGTCAGGAG ATGCACGATC TGTATGTCAG TTTCGACGTC AAAGACCTAC AAAAAGCGAT GTTCCGCCAG CAGAGTTTCC CGTCAGTGGT GATGAACCCC CAGGATGCGC ATAGCGCTTA TATTCGCGGT GACGTGGAGT TGGTGCGGAT TCGTGATGCC GAAGGGCGAA TTGCGGCAGA AGGGGCGTTG CCTTATCCAC CTGGCGTGCT TTGCGTGGTA CCCGGGGAAG TCTGGGGTGG GGCGGTTCAA CGTTATTTCC TTGCACTGGA AGAAGGGGTG AATTTGTTGC CGGGATTTTC GCCGGAGCTG CAAGGTGTTT ATAGCGAAAC CGATGCGGAT GGCGTGAAAC GGTTGTACGG TTATGTGTTG AAGTAA
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Protein sequence | MKSMNIAASS ELVSRLSSHR RVVALGDTDF TDVAAVVITA ADSRSGILAL LKRTGFHLPV FLYSEHAVEL PAGVTAVING NEQQWLELES AACQYEENLL PPFYDTLTQY VEMGNSTFAC PGHQHGAFFK KHPAGRHFYD FFGENVFRAD MCNADVKLGD LLIHEGSAKD AQKFAAKVFH ADKTYFVLNG TSAANKVVTN ALLTRGDLVL FDRNNHKSNH HGALIQAGAT PVYLEASRNP FGFIGGIDAH CFNEEYLRQQ IRDVAPEKAD LPRPFRLAII QLGTYDGTVY NARQVIDTVG HLCDYILFDS AWVGYEQFIP MMADSSPLLL ELNENDPGIF VTQSVHKQQA GFSQTSQIHK KDNHIRGQAR FCPHKRLNNA FMLHASTSPF YPLFAALDVN AKIHEGESGR RLWAECVELG IESRKAILAR CKLFRPFIPP VVDGKLWQDY PTSVLASDRR FFSFEPGAKW HGFEGYAADQ YFVDPCKLLL TTPGIDAETG EYSDFGVPAT ILAHYLRENG IVPEKCDLNS ILFLLTPAES HEKLAQLVAM LAQFEQHIED DSPLVEVLPS VYNKYPVRYR DYTLRQLCQE MHDLYVSFDV KDLQKAMFRQ QSFPSVVMNP QDAHSAYIRG DVELVRIRDA EGRIAAEGAL PYPPGVLCVV PGEVWGGAVQ RYFLALEEGV NLLPGFSPEL QGVYSETDAD GVKRLYGYVL K
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