| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A2954 |
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| Symbol | csdA |
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| ID | 5594275 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli HS |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009800 |
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| Strand | + |
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| Start bp | 2961546 |
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| End bp | 2962751 |
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| Gene Length | 1206 bp |
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| Protein Length | 401 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640922073 |
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| Product | cysteine sulfinate desulfinase |
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| Protein accession | YP_001459582 |
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| Protein GI | 157162264 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0520] Selenocysteine lyase |
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| TIGRFAM ID | [TIGR01979] cysteine desulfurases, SufS subfamily
[TIGR03392] cysteine desulfurase, catalytic subunit CsdA |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0000000519632 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGTTT TTAATCCAGC GCAGTTTCGC GCCCAGTTTC CCGCACTACA GGATGCGGGC
GTCTATCTCG ACAGCGCCGC GACCGCGCTT AAACCTGAAG CCGTGGTTGA AGCCACCCAA
CAGTTTTACA GTCTGAGCGC CGGAAACGTC CATCGCAGCC AGTTTGCCGA AGCCCAACGC
CTGACCACGC GTTATGAAGC TGCACGAGAG AAAGTGGCGC AATTACTGAA TGCACCGGAT
GATAAAACTA TCGTCTGGAC GCGCGGCACC ACTGAATCCA TCAACATGGT GGCACAATGC
TATGCGCGTC CGCGTCTGCA ACCGGGCGAT GAGATTATTG TCAGCGTGGC AGAACACCAC
GCTAACCTCG TCCCCTGGCT GATGGTCGCC CAACAAACTG GAGCCAAAGT GGTGAAATTG
CCGCTTAATG CGCAGCGACT GCCGGATGTC GATTTGTTGC CAGAACTGAT TACTCCCCGT
AGTCGGATTC TGGCGTTGGG TCAGATGTCG AACGTTACTG GCGGTTGCCC GGATCTGGCG
CGAGCGATTA CCTTTGCTCA TTCAGCCGGG ATGGTGGTGA TGGTTGATGG TGCTCAGGGG
GCGGTGCATT TCCCCGCAGA TGTTCAGCAA CTGGATATCG ATTTATATGC TTTCTCTGGT
CACAAACTGT ATGGCCCGAC GGGTATCGGC GTGCTGTATG GCAAATCAGA ACTGCTGGAA
GCGATGTCGC CCTGGCTGGG TGGCGGCAAA ATGATTCACG AAGTGAGTTT TGACGGCTTC
ACGACTCAAT CTGCGCCGTG GAAACTGGAA GCAGGAACGC CAAATGTGGC TGGTGTCATA
GGATTAAGCG CGGCGCTGGA ATGGCTGGCA GATTACGATA TCAACCAGGC AGAAAGTTGG
AGTCGCAGCC TGGCGACGCT GGCGGAAGAT GCGCTGGCAA AACGTCCAGG CTTTCGTTCA
TTCCGCTGCC AGGATTCCAG CCTGCTGGCC TTTGATTTTG CTGGCGTTCA TCACAGCGAT
ATGGTGACGC TGCTGGCGGA GTACGGTATT GCCCTGCGCG CCGGGCAGCA TTGCGCTCAG
CCGCTACTGG CAGAATTAGG CGTAACCGGC ACACTGCGCG CCTCTTTTGC GCCATATAAT
ACAAAGAGTG ATGTGGATGC GCTGGTGAAT GCCGTTGACC GCGCGCTGGA ATTATTGGTG
GATTAA
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| Protein sequence | MNVFNPAQFR AQFPALQDAG VYLDSAATAL KPEAVVEATQ QFYSLSAGNV HRSQFAEAQR
LTTRYEAARE KVAQLLNAPD DKTIVWTRGT TESINMVAQC YARPRLQPGD EIIVSVAEHH
ANLVPWLMVA QQTGAKVVKL PLNAQRLPDV DLLPELITPR SRILALGQMS NVTGGCPDLA
RAITFAHSAG MVVMVDGAQG AVHFPADVQQ LDIDLYAFSG HKLYGPTGIG VLYGKSELLE
AMSPWLGGGK MIHEVSFDGF TTQSAPWKLE AGTPNVAGVI GLSAALEWLA DYDINQAESW
SRSLATLAED ALAKRPGFRS FRCQDSSLLA FDFAGVHHSD MVTLLAEYGI ALRAGQHCAQ
PLLAELGVTG TLRASFAPYN TKSDVDALVN AVDRALELLV D
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