| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A2359 |
|---|
| Symbol | rcsC |
|---|
| ID | 5593131 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli HS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009800 |
|---|
| Strand | - |
|---|
| Start bp | 2358009 |
|---|
| End bp | 2360858 |
|---|
| Gene Length | 2850 bp |
|---|
| Protein Length | 949 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640921486 |
|---|
| Product | hybrid sensory kinase in two-component regulatory system with RcsB and YojN |
|---|
| Protein accession | YP_001459020 |
|---|
| Protein GI | 157161702 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.000000333746 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAAATACC TTGCTTCTTT TCGTACAACC CTGAAAGCCT CGCGCTACAT GTTCAGAGCA
TTGGCGTTAG TGCTCTGGCT GTTGATTGCT TTTTCATCCG TTTTTTACAT CGTTAATGCG
TTACATCAGC GAGAATCGGA AATTCGTCAG GAATTTAATC TGAGTTCCGA TCAGGCTCAG
CGCTTTATTC AACGCACCTC TGATGTGATG AAAGAGCTGA AGTACATCGC TGAAAATCGC
TTATCGGCAG AAAACGGTGT GCTTTCCCCG CGTGGACGAG AAACGCAGGC GGATGTGCCT
GCGTTTGAAC CGCTGTTTGC CGACTCTGAT TGTTCCGCAA TGAGTAACAC CTGGCGAGGT
TCTCTGGAGT CATTGGCGTG GTTTATGCGC TACTGGCGCG ATAATTTTTC TGCGGCTTAC
GATCTCAACC GGGTATTTTT AATCGGCAGC GATAACCTCT GCATGGCCAA TTTCGGTCTG
CGTGATATGC CAGTGGAACG CGATACCGCG TTGAAAGCGT TGCATGAACG CATCAATAAA
TATCGAAATG CACCACAAGA TGATAGCGGC AGTAACCTCT ACTGGATCAG CGAAGGTCCG
CGCCCTGGCG TCGGGTATTT TTACGCGTTG ACGCCAGTTT ATCTGGCGAA CCGGTTGCAG
GCGCTTTTGG GTGTCGAGCA GACCATCCGG ATGGAGAACT TTTTCTTACC GGGCACGTTG
CCGATGGGGG TTACCATTCT TGATGAAAAT GGTCATACCC TGATTTCGCT TACCGGACCT
GAAAGCAAAA TTAAGGGCGA TCCTCGCTGG ATGCAGGAAC GCTCCTGGTT TGGCTATACG
GAAGGGTTCC GGGAGCTGGT GCTGAAGAAA AATCTGCCAC CCTCATCGCT AAGCATCGTG
TATTCGGTGC CGGTTGATAA GGTGCTGGAA CGCATTCGCA TGTTGATCCT TAACGCAATT
TTGCTGAATG TGCTTGCCGG AGCTGCATTG TTTACTCTCG CACGGATGTA CGAGCGACGT
ATTTTCATTC CGGCGGAAAG CGACGCCCTG CGACTGGAAG AACATGAGCA GTTCAATCGC
AAGATTGTCG CCTCCGCGCC AGTGGGTATC TGCATTTTGC GTACCGCTGA TGGCGTCAAT
ATTTTAAGTA ACGAACTGGC GCATACCTAT CTCAATATGC TTACGCATGA GGACCGCCAA
CGACTGACGC AAATTATCTG TGGGCAGCAG GTCAATTTTG TTGATGTCCT GACCAGCAAC
AATACCAATC TGCAAATCAG CTTCGTCCAT TCGCGCTATC GTAATGAAAA CGTGGCCATT
TGTGTGCTGG TGGATGTTTC TTCGCGCGTG AAGATGGAAG AGTCGTTGCA GGAGATGGCA
CAAGCAGCGG AACAGGCGAG CCAGTCAAAA TCGATGTTCC TTGCCACCGT CAGTCATGAG
CTGCGAACGC CGCTGTATGG CATTATCGGT AACCTGGATC TGTTGCAAAC CAAAGAGTTA
CCGAAAGGCG TCGATCGTCT GGTGACGGCA ATGAACAACT CTTCCAGCCT GTTGTTGAAA
ATTATCAGCG ATATTCTCGA TTTCTCGAAG ATTGAATCGG AACAGTTGAA GATCGAACCG
CGTGAGTTTT CACCGCGTGA AGTGATGAAC CACATCACCG CCAACTATTT ACCGCTGGTG
GTACGCAAGC AGTTAGGCTT GTACTGCTTT ATTGAACCGG ATGTGCCAGT GGCCTTAAAT
GGCGACCCGA TGCGTTTACA GCAGGTCATC TCCAACCTGT TGAGTAACGC CATAAAATTC
ACCGATACCG GCTGTATAGT TTTGCATGTC CGCGCTGATG GCGATTATCT CTCTATCCGT
GTTCGCGATA CCGGCGTGGG GATTCCGGCG AAAGAAGTGG TGCGCTTGTT TGATCCCTTC
TTCCAGGTCG GAACGGGCGT ACAGCGAAAC TTCCAGGGGA CCGGTCTGGG TCTGGCGATT
TGTGAAAAAC TGATCAGCAT GATGGACGGC GATATCTCGG TAGATTCAGA ACCGGGAATG
GGCAGCCAGT TTACCGTGCG TATTCCGTTG TACGGCGCTC AGTACCCGCA GAAAAAAGGC
GTGGAAGGGT TGAGTGGTAA ACGCTGCTGG CTGTCGGTCC GCAATGCGTC GCTCTGTCAG
TTCCTGGAAA CCAGTTTGCA GCGCAGCGGC ATCGTCGTTA CAACATACGA AGGGCAGGAA
CCGACTCCCG AAGATGTGTT AATTACTGAC GAGGTAGTGA GTAAAAAATG GCAGGGTAGA
GCGGTAGTGA CCTTCTGTCG TCGCCATATT GGTATTCCGC TGGAGAAAGC GCCAGGGGAG
TGGGTACACA GTGTGGCTGC CCCGCATGAG CTACCGGCAT TGTTGGCGCG TATTTATTTG
ATCGAGATGG AGAGCGACGA TCCTGCTAAC GCTCTGCCGT CGACGGACAA AGCGGTCAGC
GATAATGACG ATATGATGAT TCTGGTCGTG GATGATCATC CGATTAACCG ACGTCTGCTG
GCAGATCAGT TGGGATCGTT GGGCTATCAA TGTAAAACCG CGAATGATGG TGTCGATGCG
CTTAATGTAC TTAGCAAGAA TCATATTGAT ATCGTGCTTA GCGACGTCAA CATGCCAAAT
ATGGATGGTT ACCGCTTGAC GCAACGCATT CGTCAGTTGG GACTGACGTT GCCGGTAATC
GGAGTAACTG CTAATGCGTT GGCTGAAGAG AAGCAGCGGT GTCTGGAGTC CGGTATGGAC
AGCTGCCTGT CGAAGCCGGT AACGCTGGAT GTGATAAAAC AGACGCTGAC GGTATATGCC
GAGAGGGTCA GGAAATCGCG GGAATCGTAG
|
|---|
| Protein sequence | MKYLASFRTT LKASRYMFRA LALVLWLLIA FSSVFYIVNA LHQRESEIRQ EFNLSSDQAQ
RFIQRTSDVM KELKYIAENR LSAENGVLSP RGRETQADVP AFEPLFADSD CSAMSNTWRG
SLESLAWFMR YWRDNFSAAY DLNRVFLIGS DNLCMANFGL RDMPVERDTA LKALHERINK
YRNAPQDDSG SNLYWISEGP RPGVGYFYAL TPVYLANRLQ ALLGVEQTIR MENFFLPGTL
PMGVTILDEN GHTLISLTGP ESKIKGDPRW MQERSWFGYT EGFRELVLKK NLPPSSLSIV
YSVPVDKVLE RIRMLILNAI LLNVLAGAAL FTLARMYERR IFIPAESDAL RLEEHEQFNR
KIVASAPVGI CILRTADGVN ILSNELAHTY LNMLTHEDRQ RLTQIICGQQ VNFVDVLTSN
NTNLQISFVH SRYRNENVAI CVLVDVSSRV KMEESLQEMA QAAEQASQSK SMFLATVSHE
LRTPLYGIIG NLDLLQTKEL PKGVDRLVTA MNNSSSLLLK IISDILDFSK IESEQLKIEP
REFSPREVMN HITANYLPLV VRKQLGLYCF IEPDVPVALN GDPMRLQQVI SNLLSNAIKF
TDTGCIVLHV RADGDYLSIR VRDTGVGIPA KEVVRLFDPF FQVGTGVQRN FQGTGLGLAI
CEKLISMMDG DISVDSEPGM GSQFTVRIPL YGAQYPQKKG VEGLSGKRCW LSVRNASLCQ
FLETSLQRSG IVVTTYEGQE PTPEDVLITD EVVSKKWQGR AVVTFCRRHI GIPLEKAPGE
WVHSVAAPHE LPALLARIYL IEMESDDPAN ALPSTDKAVS DNDDMMILVV DDHPINRRLL
ADQLGSLGYQ CKTANDGVDA LNVLSKNHID IVLSDVNMPN MDGYRLTQRI RQLGLTLPVI
GVTANALAEE KQRCLESGMD SCLSKPVTLD VIKQTLTVYA ERVRKSRES
|
|---|
| |