| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A2354 |
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| Symbol | ompC |
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| ID | 5593770 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli HS |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009800 |
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| Strand | - |
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| Start bp | 2352627 |
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| End bp | 2353733 |
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| Gene Length | 1107 bp |
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| Protein Length | 368 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640921480 |
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| Product | outer membrane porin protein C |
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| Protein accession | YP_001459015 |
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| Protein GI | 157161697 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.00268594 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGTTA AAGTACTGTC CCTCCTGGTC CCAGCTCTGC TGGTAGCAGG CGCAGCAAAC
GCTGCTGAAG TTTACAACAA AGACGGCAAC AAATTAGATC TGTACGGTAA AGTAGACGGC
CTGCACTATT TCTCTGACAA CAAGTCAGAA GACGGCGACC AGACCTATGT ACGTCTTGGT
TTCAAAGGCG AAACTCAGGT TACTGACCAG CTGACCGGTT ACGGCCAGTG GGAATATCAG
ATCCAGGGCA ATACCTCTGA AGACAACAAA GAAAACTCCT GGACCCGTGT GGCATTCGCA
GGTCTGAAAT TCCAGGATGT AGGTTCTTTC GACTACGGTC GTAACTACGG CGTTGTTTAC
GACGTAACTT CCTGGACCGA CGTACTGCCA GAATTCGGTG GCGACACCTA CGGTTCTGAC
AACTTCATGC AGCAGCGTGG TAACGGCTTC GCGACCTACC GTAACACCGA CTTCTTCGGT
CTGGTTGACG GTCTGAACTT TGCTGTTCAG TACCAGGGCA AAAACGGCAG CGTAAGCGGC
GAAGGCATGA CCAACAACGG TCGTGGCGCT CTGCGTCAGA ACGGCGACGG TGTCGGCGGT
TCTATCACTT ATGATTACGA AGGCTTCGGT ATCGGTGCTG CAGTTTCCAG CTCCAAACGT
ACTGATGCTC AGAACACCGC TGCTTACATC GGTAACGGCG ACCGTGCTGA AACCTACACT
GGTGGTCTGA AATACGACGC TAACAACATC TACCTGGCTG CTCAGTACAC CCAGACCTAC
AACGCAACTC GCGTAGGTTC CCTGGGTTGG GCGAACAAAG CACAGAACTT CGAAGCTGTT
GCTCAGTACC AGTTCGACTT CGGTCTGCGT CCGTCTGTAG CATACCTGCA GTCTAAAGGT
AAAAACCTGG GTGTCGTTGC TGGTCGTAAC TACGACGACG AAGATATCCT GAAATATGTT
GATGTTGGTG CGACCTACTA CTTCAACAAA AACATGTCCA CCTACGTTGA CTACAAAATC
AACCTGCTGG ACGACAACCA GTTCACTCGT GACGCTGGCA TCAACACTGA TAACATCGTA
GCTCTGGGTC TGGTTTACCA GTTCTAA
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| Protein sequence | MKVKVLSLLV PALLVAGAAN AAEVYNKDGN KLDLYGKVDG LHYFSDNKSE DGDQTYVRLG
FKGETQVTDQ LTGYGQWEYQ IQGNTSEDNK ENSWTRVAFA GLKFQDVGSF DYGRNYGVVY
DVTSWTDVLP EFGGDTYGSD NFMQQRGNGF ATYRNTDFFG LVDGLNFAVQ YQGKNGSVSG
EGMTNNGRGA LRQNGDGVGG SITYDYEGFG IGAAVSSSKR TDAQNTAAYI GNGDRAETYT
GGLKYDANNI YLAAQYTQTY NATRVGSLGW ANKAQNFEAV AQYQFDFGLR PSVAYLQSKG
KNLGVVAGRN YDDEDILKYV DVGATYYFNK NMSTYVDYKI NLLDDNQFTR DAGINTDNIV
ALGLVYQF
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