| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A1847 |
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| Symbol | topB |
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| ID | 5591031 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli HS |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009800 |
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| Strand | - |
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| Start bp | 1863081 |
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| End bp | 1865042 |
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| Gene Length | 1962 bp |
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| Protein Length | 653 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640920991 |
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| Product | DNA topoisomerase III |
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| Protein accession | YP_001458543 |
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| Protein GI | 157161225 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.00000137821 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGGTTGT TTATTGCCGA AAAACCGAGT CTGGCGCGCG CCATTGCTGA TGTCCTGCCC
AAACCGCACC GGAAAGGCGA TGGCTTTATC GAGTGCGGTA ATGGTCAGGT GGTGACCTGG
TGTATCGGTC ACCTGCTTGA GCAGGCGCAG CCAGACGCCT ACGACAGCCG CTATGCGCGC
TGGAATCTTG CGGATTTGCC GATTGTCCCG GAAAAGTGGC AATTACAGCC CCGACCCTCC
GTGACCAAAC AACTTAACGT CATCAAACGC TTCCTGCATG AAGCCAGCGA AATCGTTCAC
GCCGGGGACC CGGATCGTGA AGGGCAATTG CTGGTGGATG AAGTGCTGGA CTATCTGCAA
CTGGCACCGG AAAAGCGCCA GCAGGTGCAG CGTTGCTTGA TAAACGACCT GAACCCGCAG
GCGGTTGAGC GGGCGATCGA CCGTCTTCGT TCCAACAGTG AGTTTGTACC GCTGTGCGTT
TCTGCGCTGG CGCGAGCGCG TGCCGACTGG CTGTACGGCA TCAATATGAC CCGTGCTTAC
ACCATTCTCG GTCGCAATGC TGGTTATCAG GGCGTGCTTT CCGTGGGGCG CGTGCAGACA
CCCGTGCTCG GGCTGGTGGT GCGCCGCGAT GAAGAGATTG AAAACTTCGT GGCGAAAGAC
TTCTTTGAAG TCAAAGCGCA TATCGTGACA CCTGCCGATG AGCGGTTTAC CGCTATCTGG
CAACCGAGCG AAGCGTGTGA ACCGTACCAG GATGAAGAAG GGCGCTTGTT ACATCGTCCA
CTGGCGGAGC ATGTGGTTAA CCGCATTAGT GGTCAACCGG CTATTGTCAC CAGCTATAAC
GATAAACGGG AATCAGAATC CGCGCCGCTG CCGTTTTCGC TTTCGGCGTT GCAGATTGAA
GCGGCAAAAC GCTTTGGTCT GAGCGCGCAG AACGTGCTTG ATATCTGCCA GAAACTGTAC
GAAACGCACA AGCTAATCAC TTATCCGCGT TCTGATTGTC GCTATTTGCC AGAAGAACAT
TTTGCCGGAC GCCACGCGGT GATGAATGCC ATCAGTGTTC ATGCACCGGA TCTGCTGCCG
CAGCCAGTGG TAGATCCAGA TATACGCAAC CGCTGTTGGG ATGACAAAAA GGTCGATGCG
CACCACGCCA TCATTCCGAC CGCACGGAGT TCTGCGATCA ACCTGACGGA GAACGAAGCG
AAGGTCTATA ACCTGATTGC CCGTCAGTAT CTGATGCAAT TCTGCCCGGA TGCGGTGTTC
CGCAAGTGTG TTATCGAACT GGACATTGCC AAAGGCAAAT TTGTCGCTAA AGCGCGTTTT
CTTGCTGAAG CAGGCTGGCG CACGCTGTTA GGCAGCAAAG AGCGCGATGA AGAAAACGAC
GGCACGCCAC TGCCTGTGGT GGCGAAAGGC GATGAGTTGC TGTGTGAAAA AGGTGAAGTG
GTAGAGCGGC AAACCCAGCC GCCGCGCCAT TTTACCGATG CAACACTGCT TTCGGCGATG
ACCGGGATCG CGCGCTTTGT GCAGGATAAA GATCTGAAAA AGATCCTCCG TGCGACCGAT
GGTCTGGGGA CAGAGGCAAC GCGTGCCGGG ATTATTGAAC TGTTGTTCAA GCGTGGTTTC
CTGACCAAAA AAGGGCGCTA TATCCACTCC ACCGACGCCG GAAAAGCGCT ATTCCATTCG
CTGCCGGAGA TGGCGACGCG ACCGGACATG ACCGCGCACT GGGAATCGGT GCTGACGCAA
ATCAGCGAAA AGCAGTGTCG CTATCAGGAC TTTATGCAGC CGCTGGTGGG GACGCTATAT
CAGCTTATTG ATCAAGCCAA ACGTACGCCG GTGCGGCAGT TTCGCGGCAT TGTGGCTCCG
GGCAGTGGTG GCAGTGCTGA TAAGAAAAAG GCTGCACCGC GTAAACGTAG TGCGAAAAAA
AGTCCGCCAG CAGATGAAGT CGGAAGCGGG GCGATAGCGT AA
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| Protein sequence | MRLFIAEKPS LARAIADVLP KPHRKGDGFI ECGNGQVVTW CIGHLLEQAQ PDAYDSRYAR
WNLADLPIVP EKWQLQPRPS VTKQLNVIKR FLHEASEIVH AGDPDREGQL LVDEVLDYLQ
LAPEKRQQVQ RCLINDLNPQ AVERAIDRLR SNSEFVPLCV SALARARADW LYGINMTRAY
TILGRNAGYQ GVLSVGRVQT PVLGLVVRRD EEIENFVAKD FFEVKAHIVT PADERFTAIW
QPSEACEPYQ DEEGRLLHRP LAEHVVNRIS GQPAIVTSYN DKRESESAPL PFSLSALQIE
AAKRFGLSAQ NVLDICQKLY ETHKLITYPR SDCRYLPEEH FAGRHAVMNA ISVHAPDLLP
QPVVDPDIRN RCWDDKKVDA HHAIIPTARS SAINLTENEA KVYNLIARQY LMQFCPDAVF
RKCVIELDIA KGKFVAKARF LAEAGWRTLL GSKERDEEND GTPLPVVAKG DELLCEKGEV
VERQTQPPRH FTDATLLSAM TGIARFVQDK DLKKILRATD GLGTEATRAG IIELLFKRGF
LTKKGRYIHS TDAGKALFHS LPEMATRPDM TAHWESVLTQ ISEKQCRYQD FMQPLVGTLY
QLIDQAKRTP VRQFRGIVAP GSGGSADKKK AAPRKRSAKK SPPADEVGSG AIA
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