Gene EcHS_A1838 details

Gene Information

• Locus tag: EcHS_A1838
• ID: 5592129
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli HS
• Kingdom: Bacteria
• Replicon accession: NC_009800
• Strand: +
• Start bp: 1854155
• End bp: 1855321
• Gene Length: 1167 bp
• Protein Length: 388 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 640920982
• Product: putative ABC transporter solute-binding protein
• Protein accession: YP_001458534
• Protein GI: 157161216
• COG category: [R] General function prediction only
• COG ID: [COG4134] ABC-type uncharacterized transport system, periplasmic component

Plasmid Coverage information

• Num covering plasmid clones: 70
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGCCATT GTGGGTGGTT GCTGGGATTG TTATCGCTGT TTTCTCTGGC AACACATGCC 
AGTGACTGGC AAGAAATTAA AAATGAGGCC AAAGGGCAAA CCGTCTGGTT TAACGCCTGG 
GGCGGCGATA CCGCAATTAA CCGCTATCTC GACTGGGTGA GCGGCGAGAT GAAAACCCAT 
TACGCTATAA ACCTGAAGAT TGTCCGTCTG GCGGATGCCG CAGACGCGGT GAAGCGCATT 
CAGACCGAAG CCGCAGCCGG ACGTAAAACG GGCGGCTCGG TGGATCTGCT CTGGGTGAAC 
GGCGAAAACT TCCGCACCTT AAAAGAGGCC AATTTATTAC AAACGGGCTG GGCGGAGACT 
CTGCCCAACT GGCGCTATGT CGACACACAG CTGCCGGTGC GGGAAGATTT TTCTGTGCCG 
ACACAAGGTG CGGAATCGCC CTGGGGCGGC GCACAACTGA CGTTTATCGC CCGCCGCGAT 
GTTACGCCAC AGCCACCACA AACGCCGCAA GCCTTACTGG AGTTTGCTAA AGCCAATCCC 
GGCACGGTTA CCTATCCGCG CCCACCGGAC TTTACCGGCA CGGCGTTTCT TGAACAGTTG 
CTGATTATGC TGACGCCCGA TCCCGCCGCA TTAAAAGAAG CGCCGGACGA TGCGACTTTC 
GCCCGTGTCA CTGCTCCCTT GTGGCAATAT CTTGATGTGC TGCATCCGTA TTTGTGGCGC 
GAAGGAAAGG ATTTCCCGCC TTCACCCGCG CGGATGGATG CTCTGCTGAA AGCCGGCACA 
TTGCGCCTGT CGCTGACCTT TAACCCCGCG CATGCGCAGC AAAAAATCGC CAGCGGCGAT 
TTGCCTGCAA GCAGTTACAG TTTTGGCTTT CGCGAGGGGA TGATTGGCAA CGTGCATTTC 
GTCACCATTC CTGCCAACGC GAATGCCAGT GCTGCGGCGA AGGTAGTTGC CAATTTCCTG 
CTCTCACCCG ATGCGCAACT GCGTAAAGCA GATCCCGCTG TCTGGGGCGA TCCTTCTGTT 
CTCGATCCGC AAAAACTGCC TGACGGGCAG CGCGAATCAT TGCAATCAAG AATGCCGCAG 
GATCTGCCGC CGGTACTGGC TGAACCGCAC GCAGGTTGGG TAAATGCGCT GGAACAAGAA 
TGGCTACACC GTTACGGTAC GCATTAA 

 

Protein sequence

MRHCGWLLGL LSLFSLATHA SDWQEIKNEA KGQTVWFNAW GGDTAINRYL DWVSGEMKTH 
YAINLKIVRL ADAADAVKRI QTEAAAGRKT GGSVDLLWVN GENFRTLKEA NLLQTGWAET 
LPNWRYVDTQ LPVREDFSVP TQGAESPWGG AQLTFIARRD VTPQPPQTPQ ALLEFAKANP 
GTVTYPRPPD FTGTAFLEQL LIMLTPDPAA LKEAPDDATF ARVTAPLWQY LDVLHPYLWR 
EGKDFPPSPA RMDALLKAGT LRLSLTFNPA HAQQKIASGD LPASSYSFGF REGMIGNVHF 
VTIPANANAS AAAKVVANFL LSPDAQLRKA DPAVWGDPSV LDPQKLPDGQ RESLQSRMPQ 
DLPPVLAEPH AGWVNALEQE WLHRYGTH