Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcHS_A1721 |
Symbol | |
ID | 5594192 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli HS |
Kingdom | Bacteria |
Replicon accession | NC_009800 |
Strand | + |
Start bp | 1743217 |
End bp | 1744074 |
Gene Length | 858 bp |
Protein Length | 285 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640920869 |
Product | MFP family transporter |
Protein accession | YP_001458425 |
Protein GI | 157161107 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 40 |
Plasmid unclonability p-value | 0.336288 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCAATTA AAACAATTAA GTATTTCTCA ACAATCATTG TAGCGGTAGT TGCGGTTCTT GCCGGATGGT GGCTGTGGAA TTATTACATG CAATCTCCGT GGACACGCGA CGGGAAAATA CGCGCAGAAC AGGTTTCTAT CACCCCACAG GTGTCGGGAC GTATTGTTGA GCTGAATATA AAAGACAACC AGCTGGTTAA CGCGGGGGAT CTTCTGCTCA CGATCGATAA AACGCCCTTT CAGATCGCCG AGCTGAACGC ACAGGCTCAG CTGGCGAAAG CGCAATCTGA CCTCGCAAAA GCCAATAACG AAGCGAATCG TCGTCGTCAT CTCTCACAAA ATTTTATTTC TGCCGAAGAA CTCGATACCG CTAACCTCAA TGTTAAAGCG ATGCAGGCCA GTGTTGATGC CGCACAGGCG ACGCTGAAAC AGGCACAATG GCAACTGGCG CAAACGGAAA TTCGCGCCCC GGTGAGTGGA TGGGTGACTA ACCTTACTAC CCGCATCGGC GATTACGCTG ATACCGGGAA ACCGCTGTTT GCCCTTGTCG ACAGCCACTC GTTTTACGTC ATTGGTTATT TTGAAGAAAC CAAGTTGCGC CATATCCGCG AAGGTGCACC AGCACAAATT ACCCTCTATA GTGATAACAA AACGTTACAG GGTCACGTTT CCAGTATCGG TCGGGCGATT TATGATCAGA GCGTTGAAAG TGACTCAAGC CTTATTCCGG ATGTTAAACC TAACGTCCCC TGGGTTCGAC TCGCCCAACG CGTTCCCGTC CGCTTTGCGC TGGATAAAGT CCCAGGCGAT GTCACGTTGG TGTCGGGCAC CACCTGTAGC ATTGCCGTAG GTCAATAA
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Protein sequence | MSIKTIKYFS TIIVAVVAVL AGWWLWNYYM QSPWTRDGKI RAEQVSITPQ VSGRIVELNI KDNQLVNAGD LLLTIDKTPF QIAELNAQAQ LAKAQSDLAK ANNEANRRRH LSQNFISAEE LDTANLNVKA MQASVDAAQA TLKQAQWQLA QTEIRAPVSG WVTNLTTRIG DYADTGKPLF ALVDSHSFYV IGYFEETKLR HIREGAPAQI TLYSDNKTLQ GHVSSIGRAI YDQSVESDSS LIPDVKPNVP WVRLAQRVPV RFALDKVPGD VTLVSGTTCS IAVGQ
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