Gene EcHS_A1356 details

Gene Information

• Locus tag: EcHS_A1356
• Symbol: oppF
• ID: 5593332
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli HS
• Kingdom: Bacteria
• Replicon accession: NC_009800
• Strand: +
• Start bp: 1352821
• End bp: 1353825
• Gene Length: 1005 bp
• Protein Length: 334 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 640920511
• Product: oligopeptide ABC transporter, ATP-binding protein OppF
• Protein accession: YP_001458070
• Protein GI: 157160752
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG4608] ABC-type oligopeptide transport system, ATPase component
• TIGRFAM ID: [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 0.0000101924
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATGCTG TAACTGAAGG AAGAAAAGTC CTCCTTGAAA TCGCCGATCT TAAAGTGCAC 
TTTGAAATCA AAGATGGCAA ACAGTGGTTC TGGCAACCGC CGAAAACGCT CAAAGCCGTC 
GATGGTGTCA CTCTTCGCCT GTATGAAGGG GAAACATTAG GTGTGGTAGG GGAATCGGGA 
TGCGGTAAGT CCACCTTTGC TCGCGCCATC ATCGGTTTGG TCAAGGCGAC CGACGGTCAT 
GTTGCCTGGT TAGGTAAAGA GTTGCTGGGC ATGAAGCCCG ATGAATGGCG TGCCGTTCGC 
AGTGATATTC AGATGATTTT CCAGGATCCG TTGGCATCGC TAAACCCGCG TATGACCATC 
GGCGAGATCA TCGCTGAACC ACTGCGTACT TATCATCCGA AAATGTCACG CCAGGAAGTT 
CGCGAGCGCG TGAAGGCGAT GATGCTGAAA GTCGGGTTAT TGCCTAACCT GATTAACCGC 
TATCCGCATG AGTTCTCCGG TGGGCAGTGC CAGCGTATCG GGATTGCTCG TGCTCTTATT 
CTTGAACCGA AGCTGATTAT CTGCGATGAG CCGGTGTCGG CGCTGGACGT GTCAATTCAG 
GCGCAGGTGG TCAACCTGCT CCAGCAGCTG CAACGTGAGA TGGGATTGTC ATTAATTTTT 
ATCGCTCATG ACCTGGCCGT GGTAAAACAC ATTTCCGATC GTGTGTTGGT GATGTATCTC 
GGCCATGCGG TAGAACTGGG GACCTATGAT GAGGTCTACC ACAATCCACT ACATCCTTAC 
ACCAGGGCAT TGATGTCGGC AGTCCCCATA CCTGATCCGG ATCTGGAGAA GAACAAAACC 
ATCCAGTTAC TGGAAGGGGA ATTACCGTCG CCGATCAACC CGCCTTCCGG TTGTGTTTTC 
CGTACCCGTT GCCCGATTGC CGGTCCGGAG TGCGCCAAAA CACGTCCTGT TCTGGAGGGG 
AGTTTCAGAC ACGCCGTTTC TTGCCTGAAA GTCGATCCGC TTTAA 

 

Protein sequence

MNAVTEGRKV LLEIADLKVH FEIKDGKQWF WQPPKTLKAV DGVTLRLYEG ETLGVVGESG 
CGKSTFARAI IGLVKATDGH VAWLGKELLG MKPDEWRAVR SDIQMIFQDP LASLNPRMTI 
GEIIAEPLRT YHPKMSRQEV RERVKAMMLK VGLLPNLINR YPHEFSGGQC QRIGIARALI 
LEPKLIICDE PVSALDVSIQ AQVVNLLQQL QREMGLSLIF IAHDLAVVKH ISDRVLVMYL 
GHAVELGTYD EVYHNPLHPY TRALMSAVPI PDPDLEKNKT IQLLEGELPS PINPPSGCVF 
RTRCPIAGPE CAKTRPVLEG SFRHAVSCLK VDPL