| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcE24377A_4892 |
|---|
| Symbol | flu1 |
|---|
| ID | 5587671 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli E24377A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009801 |
|---|
| Strand | + |
|---|
| Start bp | 4879454 |
|---|
| End bp | 4882300 |
|---|
| Gene Length | 2847 bp |
|---|
| Protein Length | 948 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640928493 |
|---|
| Product | antigen 43 |
|---|
| Protein accession | YP_001465820 |
|---|
| Protein GI | 157158925 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3468] Type V secretory pathway, adhesin AidA |
|---|
| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGAC ATCTGAACAC CAGCTACAGG CTGGTATGGA ATCACATTAC GGGCACCCTG
GTGGTGGCTT CCGAACTGGC GCGCTCACGG GGAAAACGCA CCGGTGTGGC GGTTGCGCTG
TCTCTTGCTG CTGTCACGTC AGTCCCGGTA CTGGCTGCTG ACACGGTCGT ACAGGCGGGA
GAAACCGTGA GCGGCGGAAC ACTGACAAAT CATGACAACC AGATTGTCTT CGGTACGGCC
AACGGAATGA CCATCAGTAC CGGTCTGGAG TATGGGCCGG ATAACGAGGC CAATACCGGC
GGACAATGGA TACAAAATGG CGGTATCGCC AACAACACTA CTGTCACCGG TGGTGGTCTT
CAGAGAGTGA ATGCCGGAGG AAGCGTTTCA GACACGGTTA TCAGTGCCGG AGGCGGACAG
AGCCTTCAGG GGCAGGCAGT GAACACCACT CTGAACGGCG GTGAGCAGTG GGTACATGAA
GGCGGGATTG CAACGGGTAC CGTCATTAAT GAGAAGGGCT GGCAGGCCGT CAAATCCGGC
GCAATGGCAA CCGACACGGT TGTGAATACC GGCGCGGAAG GGGGACCGGA TGCAGAAAAT
GGTGATACCG GGCAGTTTGT TCGCGGAAAT GCCGTACGTA CCACTATCAA TGAAAATGGT
CGTCAGATTG TGGCTGCTGA AGGAACAGCA AATACCACTG TGGTTTATGC CGGCGGCGAC
CAGACGGTAC ACGGGCATGC GCTGGATACC ACACTGAATG GCGGTTACCA GTATGTGCAC
AACGGAGGCA CAGCCTCTGA CACGGTTGTA AACAGTGACG GCTGGCAGAT TGTCAAGGAA
GGTGGTCTGG CGGATTTCAC CACCGTTAAC CAGAAAGGCA AACTGCAGGT GAACGCCGGT
GGTACAGCCA CGAATGTCAC CCTGAAGCAG GGAGGCGCAC TGGTCACCAG TACGGCGGCA
ACCGTCACCG GCAGCAACCG TCTGGGCAAT TTCACTGTGG AAAACGGTAA TGCTGACGGT
GTTGTTCTGG AGTCCGGTGG TCGCCTGGAT GTACTGGAGG GCCATTCAGC CTGGAAAACA
CTGGTGGATG ACGGCGGAAC CCTGGCAGTG TCTGCCGGTG GTAAGGCAAC AGATGTCACC
ATGACATCCG GTAGTGCCCT GATTGCAGAC AGTGGTGCCA CTGTTGAGGG GACCAATGCC
AGCGGTAAGT TCAGTATTGA TGGCACATCC GGTCAGGCCA GCGGACTGCT GCTGGAAAAT
GGCGGCAGCT TTACGGTTAA TGCCGGAGGA CTGGCCAGCA ACACCACTGT CGGACATCGT
GGAACACTGA CGCTGGCTGC CGGGGGAAGT CTGAGTGGCA GAACACAGCT CAGTAAAGGT
GCCAGCATGG TACTGAATGG CGATGTGGTC AGTACCGGCG ATATTGTTAA CGCAGGGGAG
ATTCGCTTTG ATAATCAGAC GACACCGGAT GCCGCGCTGA GCCGTGCTGT TGCAAAAGGC
GACTCCCCGG TAACGTTCCA TAAACTGACC ACCAGTAACC TCACCGGTCA GGGTGGCACC
ATCAATATGC GTGTTCGCCT TGATGGCAGC AATACCTCTG ACCAGCTGGT GATTAATGGT
GGTCAGGCAA CCGGCAAAAC CTGGCTTGCG TTTACAAATG TCGGAAACAG TAACCTCGGG
GTGGCAACCT CCGGACAGGG TATCCGGGTT GTGGATGCAC AGAATGGCGC CACCACAGAA
GAAGGTGCGT TTGCCCTGAG TCGCCCGCTT CAGGCCGGCG CCTTTAACTA CACCCTGAAC
CGTGACAGCG ATGAAGACTG GTACCTGCGC AGTGAAAATG CTTATCGTGC TGAAGTCCCC
CTGTATACAT CCATGCTGAC ACAGGCAATG GACTATGACC GGATTCTGGC AGGCTCCCGC
AGCCATCAGA CCGGTGTAAA CGGTGAAAAT AACAGCGTCC GTCTCAGCAT TCAGGGCGGT
CATCTCGGTC ACGATAACAA CGGCGGTATT GCCCGTGGAG CCACGCCGGA AAGCAGCGGC
AGCTATGGCT TCGTCCGTCT GGAGGGTGAC CTGCTCAGAA CAGAGGTTGC CGGTATGTCT
CTGACGACAG GGGTGCATGG TGCCGCAGGC CATTCTTCCG TTGATGTTAA GGATGATGAC
GGTTCCCGCG CCGGCACGGT CCGGGATGAT GCCGGCAGCC TGGGCGGATA CCTGAATCTG
ACACACACGT CCTCCGGCCT GTGGGCTGAC ATTGTGGCAC AGGGAACCCG CCACAGCATG
AAAGCGTCAT CGGACAATAA CGACTTCCGC GCCCGCGGCT GGGGCTGGCT GGGCTCACTG
GAAACCGGTC TGCCCTTCAG TATCACTGAC AACCTGATGC TGGAGCCACA ACTGCAGTAT
ACCTGGCAGG GACTTTCCCT GGATGACGGC CAGGATAACG CCGGTTATGT GAAGTTCGGG
CATGGCAGTG CACAACATGT GCGTGCCGGT TTCCGTCTGG GCAGCCACAA CGATATGAGC
TTTGGTGAAG GCACCTCATC CCGTGACACC CTGCGCGACA GTGCAAAACA CCGTGTGCGT
GAACTGCCGG TGAACTGGTG GGTACAGCCT TCTGTTATCC GCACCTTCAG TTCCCGGGGT
GACATGAGCA TGGGGACAGC CGCCGCCGGC AGTAACATGA CGTTCTCACC GTCCCGGAAT
GGCACGTCAC TGGACCTGCA GGCCGGACTG GAAGCCCGTG TCCGGGAAAA TATCACCCTG
GGCGTTCAGG CCGGTTATGC CCACAGTGTC AGCGGCAGCA GCGCTGAAGG TTATAACGGT
CAGGCCACGC TGAATGTGAC TTTCTGA
|
|---|
| Protein sequence | MKRHLNTSYR LVWNHITGTL VVASELARSR GKRTGVAVAL SLAAVTSVPV LAADTVVQAG
ETVSGGTLTN HDNQIVFGTA NGMTISTGLE YGPDNEANTG GQWIQNGGIA NNTTVTGGGL
QRVNAGGSVS DTVISAGGGQ SLQGQAVNTT LNGGEQWVHE GGIATGTVIN EKGWQAVKSG
AMATDTVVNT GAEGGPDAEN GDTGQFVRGN AVRTTINENG RQIVAAEGTA NTTVVYAGGD
QTVHGHALDT TLNGGYQYVH NGGTASDTVV NSDGWQIVKE GGLADFTTVN QKGKLQVNAG
GTATNVTLKQ GGALVTSTAA TVTGSNRLGN FTVENGNADG VVLESGGRLD VLEGHSAWKT
LVDDGGTLAV SAGGKATDVT MTSGSALIAD SGATVEGTNA SGKFSIDGTS GQASGLLLEN
GGSFTVNAGG LASNTTVGHR GTLTLAAGGS LSGRTQLSKG ASMVLNGDVV STGDIVNAGE
IRFDNQTTPD AALSRAVAKG DSPVTFHKLT TSNLTGQGGT INMRVRLDGS NTSDQLVING
GQATGKTWLA FTNVGNSNLG VATSGQGIRV VDAQNGATTE EGAFALSRPL QAGAFNYTLN
RDSDEDWYLR SENAYRAEVP LYTSMLTQAM DYDRILAGSR SHQTGVNGEN NSVRLSIQGG
HLGHDNNGGI ARGATPESSG SYGFVRLEGD LLRTEVAGMS LTTGVHGAAG HSSVDVKDDD
GSRAGTVRDD AGSLGGYLNL THTSSGLWAD IVAQGTRHSM KASSDNNDFR ARGWGWLGSL
ETGLPFSITD NLMLEPQLQY TWQGLSLDDG QDNAGYVKFG HGSAQHVRAG FRLGSHNDMS
FGEGTSSRDT LRDSAKHRVR ELPVNWWVQP SVIRTFSSRG DMSMGTAAAG SNMTFSPSRN
GTSLDLQAGL EARVRENITL GVQAGYAHSV SGSSAEGYNG QATLNVTF
|
|---|
| |