Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcE24377A_4241 |
Symbol | fimD1 |
ID | 5587626 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli E24377A |
Kingdom | Bacteria |
Replicon accession | NC_009801 |
Strand | - |
Start bp | 4229534 |
End bp | 4232053 |
Gene Length | 2520 bp |
Protein Length | 839 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640927857 |
Product | outer membrane usher protein FimD |
Protein accession | YP_001465216 |
Protein GI | 157158761 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3188] P pilus assembly protein, porin PapC |
TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGACCA GAATAGTGGT TGGCCTCACG GCAGGGACGT GTCTGATTTT CTCGCAAAAC CTGATGGCCG AGGTCAGTGT ATTCAATCCG GCGCTTCTGG AAATCGACCA TCAATCCGGA GTCGATATTC GCCAGTTTAA TCGGGCAAAC CTGATGCCCC CAGGTGTTTA TAGCGTTGAT ATTTTTATCA ACGGTAAAAT GTTTGAACGT CAGGATGTGA CATTTGTTCA GGATAATCCA GATGCTGATC TGCACGCATG CTTTATTGCC ATTAAAAAAA CACTGTCCTC CTTTGGCATA AAAGTTGATG CGCTCAAATC GTTCAATGAT GTGGATGAGA CGGTTTGCCT CGATCCTGCT CTACGTATTG AAGGCTCATC CTGGCAGTTT GACAGTGATA AATTGCAGCT GAATATATCC ATTCCCCAAA TCTACATGGA CGCGATGGCT TATGATTACA TCAGCCCCAC GCGTTGGGAT GAGGGGATTA ACGCGCTCAC CATCAACTAC GATTTTTCTG GTTCACATAC ACTACGTTCA GATTATGGTT CACAAGAGAC AGATACCAGT TATCTCAATC TGCGCAATGG ACTGAATATT GGACCGTGGC GGCTACGTAA TTACAGTACT TTAAACACCA GCGATGGCCG TGCGGAATAC AACTCCATTA GTACCTGGAT ACAGCGCGAT ATTGCCGCGT TAAGAAGCCA GATTATGATT GGTGATACGT GGACGGCGAG CGATATTTTC GACAGTACGC AAATTCGCGG CGCGCGTTTG TATACTGATA ACGATATGCT ACCCGCCAGC CAGAATGGCT TTGCTCCTGT GGTTCGTGGG ATTGCAAAGT CCAACGCCAC CGTCATCATT CGGCAGAATG GCTACGTGAT TTATCAGTCT GCCGTTCCAC AAGGTGCTTT TGAGATCACC GATCTCAACA CCGCCAGTAC AGGTGGCGAT TTGGACGTAA CCATCAAAGA AGAAGACGGT AGCGAACAAC GATTCACCCA ACCTTATGCT TCATTGGCGA TTCTTAAACG TGAAGGTCAG ACAGATGTTG ATGTCAGCGT GGGTGAATTG CGCGATGAAG ACGGATTTAC ACCGGACGTC CTTCAGGCGC AAATACTTCA TGGTTTTTCC CACGGGATCA CTTTATATGG AGGTATGCAG GCTGCTGAAA ATTATGGTTC TGCAGCTCTG GGTGTCGGTA AAGATCTTGG CGCTTTGGGC GCAATTTCTT TCGATGTGAC ACATGCTCGT GCGAATTTTA GCCATGATGA TACAGAAACG GGTCAGTCAT ATCGCTTTCT CTATTCAAAA CGATTTGACG ACACAGACAC TAGCTTGCGC CTGGTTGGCT ATCGTTACTC CACCGAGGGC TACTATACCC TCAATGAGTG GGCATCGCGG CGCAACAGCC CTGAAGACTT TTGGGAAACA GGTAACCGAC GTAGTCGCGT GGAGGGAACG CTAACGCAGT CGTTGGGGAG AGATTATGGC AATTTATACC TGACATTAAG CCGGCAACAA TACTGGCATA CCGATGATGT CGAACGATTA ATGCAATTTG GCTACAGCAG TAGCTGGAAG CGTCTCTCGT GGAACGTCTC CTGGAGTTAT TCCAATACTG CCAGACAGGG GACGGGGAAC AACCATGCCA GTGATAACAC CAGTGAGCAG ATCTACATGC TCTCTTTATC TGTTCCTTTA TCGGGCTGGT GGGGTAATAG TTACGCCACC TATTCTGTTT CGCAAAACGA TAATTCCGGT AGCTCACATC AACTCGGACT CAGCGGTACG GCGCTGGAAA GAAATAACCT TTCATGGAAT TTAATGCAGT CCTATAACAG TCATGATGAT GAGGTTGGCG GTAATATGTC CCTGACCTAT GATGGCTCTT ATGGCACGGT GAACGGCAGC TATAACTACA GCCAAAATTC CCAGAGGCTG AATTATGGTA TCAGAGGGGG AATTCTGGCA CACAGCGAAG GGGTAACGTT AAGTCAGGAG TTAGGTGAAA CTATTGCTCT TGTTAAAGCA CCTGGGGCCG CCGGGTTAGA AATAGATAAT ATGCGCGGTG CTGCGACGGA CTGGCGCGGC TATACGGTCA AGACACAGCT AAACCCTTAT GATGAAAATC GGGTAGCAAT CAGCGATAAC TATTTCTCGA AGTCGAATAT AGAACTTGAT AATACCGTCG TTACGATGGT TCCCACGCGT GGTGCAGTGG TTAAAGCGGA GTTTGTGACT CATGTGGGTT ATCGCGTTCT CTTCAGAGTG TTAAATGCAA ATGGTAAACC GGTACCTTTT GGAGCCATTG CTGCGATACA AGATGCAAGT TTGGCAGATT CAGGAATTGT CGGTGACCGT GGCGAACTTT ATCTTTCTGG TCTACCAGAA AAAGGACAGG TTACGTTATC CTGGGGAGAA AACGCCTCAA CAAAATGCAT CTTCAATTAT TCACTTTCGA CACCAGAAAG TGAGAGCGGA TTAATTGAAC AGGGTGTGAC ATGTCATTAA
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Protein sequence | MTTRIVVGLT AGTCLIFSQN LMAEVSVFNP ALLEIDHQSG VDIRQFNRAN LMPPGVYSVD IFINGKMFER QDVTFVQDNP DADLHACFIA IKKTLSSFGI KVDALKSFND VDETVCLDPA LRIEGSSWQF DSDKLQLNIS IPQIYMDAMA YDYISPTRWD EGINALTINY DFSGSHTLRS DYGSQETDTS YLNLRNGLNI GPWRLRNYST LNTSDGRAEY NSISTWIQRD IAALRSQIMI GDTWTASDIF DSTQIRGARL YTDNDMLPAS QNGFAPVVRG IAKSNATVII RQNGYVIYQS AVPQGAFEIT DLNTASTGGD LDVTIKEEDG SEQRFTQPYA SLAILKREGQ TDVDVSVGEL RDEDGFTPDV LQAQILHGFS HGITLYGGMQ AAENYGSAAL GVGKDLGALG AISFDVTHAR ANFSHDDTET GQSYRFLYSK RFDDTDTSLR LVGYRYSTEG YYTLNEWASR RNSPEDFWET GNRRSRVEGT LTQSLGRDYG NLYLTLSRQQ YWHTDDVERL MQFGYSSSWK RLSWNVSWSY SNTARQGTGN NHASDNTSEQ IYMLSLSVPL SGWWGNSYAT YSVSQNDNSG SSHQLGLSGT ALERNNLSWN LMQSYNSHDD EVGGNMSLTY DGSYGTVNGS YNYSQNSQRL NYGIRGGILA HSEGVTLSQE LGETIALVKA PGAAGLEIDN MRGAATDWRG YTVKTQLNPY DENRVAISDN YFSKSNIELD NTVVTMVPTR GAVVKAEFVT HVGYRVLFRV LNANGKPVPF GAIAAIQDAS LADSGIVGDR GELYLSGLPE KGQVTLSWGE NASTKCIFNY SLSTPESESG LIEQGVTCH
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