Gene EcE24377A_3613 details

Gene Information

• Locus tag: EcE24377A_3613
• Symbol: agaV
• ID: 5590797
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli E24377A
• Kingdom: Bacteria
• Replicon accession: NC_009801
• Strand: +
• Start bp: 3615094
• End bp: 3615567
• Gene Length: 474 bp
• Protein Length: 157 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 640927237
• Product: PTS system N-acetylgalactosamine-specific transporter subunit IIB
• Protein accession: YP_001464606
• Protein GI: 157154712
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG3444] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB
• TIGRFAM ID: [TIGR00854] PTS system, mannose/fructose/sorbose family, IIB component

Plasmid Coverage information

• Num covering plasmid clones: 29
• Plasmid unclonability p-value: 0.903374
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCAAATA TTGTTTTAAG CCGGATTGAT GAGCGTTTGA TTCACGGTCA GGTCGGCGTT 
CAGTGGGTCG GATTTGCGGG GGCAAATCTG GTGCTGGTAG CCAACGATGA GGTTGCCGAA 
GATCCGGTAC AACAAAACCT GATGGAAATG GTACTGGCAG AAGGGATCGC CGTACGTTTC 
TGGACGCTGC AAAAAGTTAT CGACAACATC CATCGCGCCG CCGATCGACA GAAAATCCTG 
CTGGTTTGTA AAACACCTGC CGATTTCCTG ACGCTGGTGA AAGGTGGCGT TCCGGTGAAT 
CGCATTAACG TTGGCAATAT GCACTACGCC AATGGCAAGC AACAAATCGC CAAAACGGTT 
TCTGTGGATG CGGGTGATAT CACAGCATTT AACGACCTGA AAACCGCTGG GGTGGAATGC 
TTCGTTCAGG GCGTCCCGAC AGAGCCTGCT GTGGACCTCT TTAAATTACT TTGA 

 

Protein sequence

MPNIVLSRID ERLIHGQVGV QWVGFAGANL VLVANDEVAE DPVQQNLMEM VLAEGIAVRF 
WTLQKVIDNI HRAADRQKIL LVCKTPADFL TLVKGGVPVN RINVGNMHYA NGKQQIAKTV 
SVDAGDITAF NDLKTAGVEC FVQGVPTEPA VDLFKLL