| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcE24377A_3164 |
|---|
| Symbol | kduD |
|---|
| ID | 5586440 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli E24377A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009801 |
|---|
| Strand | - |
|---|
| Start bp | 3179190 |
|---|
| End bp | 3179951 |
|---|
| Gene Length | 762 bp |
|---|
| Protein Length | 253 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640926806 |
|---|
| Product | 2-deoxy-D-gluconate 3-dehydrogenase |
|---|
| Protein accession | YP_001464179 |
|---|
| Protein GI | 157158009 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | [TIGR01832] 2-deoxy-D-gluconate 3-dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTTTAA GTGCATTTTC TCTCGAAGGT AAAGTTGCGG TCGTCACTGG TTGTGATACT
GGGCTGGGCC AGGGGATGGC GTTGGGGCTG GCGCAAGCGG GCTGTGACAT TGTTGGCATT
AACATCGTTG AACCGACTGA AACCATCAAG CAGGTCACGG CGCTGGGGCG TCGTTTTTTA
AGCCTGACCG CCGATCTGCG AAAGATTGAT GGTATTCCTG GACTGCTGGA TCGCGCGGTA
GCTGAGTTTG GTCATATTGA TATCCTGGTG AATAACGCCG GATTGATTCG CCGCGAAGAT
GCTCTCGAGT TCAGCGAAAA AGACTGGGAC GATGTCATGA ACCTGAATAT CAAGAGCGTA
TTCTTCATGT CTCAGGCCGC GGCGAAACAC TTTATCGCGC AAGGCAATGG CGGCAAGATT
ATCAATATCG CGTCAATGCT CTCCTTCCAG GGCGGGATCC GTGTGCCTTC TTATACCGCA
TCAAAAAGCG GCGTGATGGG CGTGACGCGA TTGATGGCGA ATGAATGGGC TAAACACAAC
ATTAATGTTA ATGCGATAGC TCCAGGTTAC ATGGCGACCA ACAATACCCA ACAACTGCGG
GCAGATGAAC AACGTAGCGC GGAAATTCTC GACCGCATTC CAGCTGGCCG TTGGGGACTG
CCGAGTGACC TGATGGGGCC GGTAGTGTTT CTTGCCTCCA GCGCTTCAGA TTATGTAAAT
GGTTATACCA TTGCTGTGGA TGGCGGTTGG CTGGCGCGTT AA
|
|---|
| Protein sequence | MILSAFSLEG KVAVVTGCDT GLGQGMALGL AQAGCDIVGI NIVEPTETIK QVTALGRRFL
SLTADLRKID GIPGLLDRAV AEFGHIDILV NNAGLIRRED ALEFSEKDWD DVMNLNIKSV
FFMSQAAAKH FIAQGNGGKI INIASMLSFQ GGIRVPSYTA SKSGVMGVTR LMANEWAKHN
INVNAIAPGY MATNNTQQLR ADEQRSAEIL DRIPAGRWGL PSDLMGPVVF LASSASDYVN
GYTIAVDGGW LAR
|
|---|
| |