| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcE24377A_1742 |
|---|
| Symbol | ydeE |
|---|
| ID | 5589248 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli E24377A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009801 |
|---|
| Strand | + |
|---|
| Start bp | 1742043 |
|---|
| End bp | 1743230 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640925420 |
|---|
| Product | putative MFS-type transporter YdeE |
|---|
| Protein accession | YP_001462825 |
|---|
| Protein GI | 157155908 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.0931308 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACTTAT CCCTACGACG CTCTACCAGC GCCCTTCTTG CCTCGTCGTT GTTATTAACC
ATCGGACGCG GCGCTACGCT GCCATTTATG ACCATTTACT TGAGTCGCCA GTACAGCCTG
AGTGTCGATC TAATCGGTTA TGCGATGACA ATTGCGCTCA CTATTAGCGT CGTTTTTAGC
CTCGGTTTTG GTATCCTGGC GGATAAGTTC GACAAGAAAC GCTATATGTT ACTGGCAATT
ACCGCCTTCG CCAGCGGTTT TATTGCCATT CCTTTAGTGA ATAACGTAAA GCTGGTGGTG
CTCTTTTTTG CCCTCATTAA CTGCGCCTAT TCTGTTTTTG CTACCGTGCT GAAAGCCTGG
TTTGCCGACA ATCTTTCGTC CACCAGCAAA ACGAAAATCT TCTCAATCAA CTACACCATG
CTAAACATTG GCTGGACCAT CGGTCCGCCG CTCGGCACGC TGTTGGTGAT GCAGAGCATC
AATCTGCCCT TCTGGCTGGC AGCTATCTGT TCCGCGTTTC CCATGCTTTT CATTCAAATT
TGGGTAAAGC GCAGCGAGAA AATCATCGCC ACGGAAACAG GCAGTGTCTG GTCGCCGAAA
GTTTTATTAC AAGATAAAGC ACTGTTGTGG TTTACCTGCT CTGGTTTTCT GGCTTCTTTT
GTAAGCGGCG CATTTGCTTC ATGCATTTCA CAATATGTGA TGGTGATTGC TGATGGGGAT
TTTGCCGAAA AGGTGGTCGC GGTTGTTCTT CCGGTGAATG CTGCCATGGT GGTTACGTTG
CAATATTCCG TGGGCCGCCG ACTTAACCCG GCTAACATCC GCGCGCTGAT GACAGCAGGC
ACCCTATGTT TCGTCATCGG TCTGGTCGGT TTTATTTTTT CCGGCAACAG CCTGCTATTG
TGGGGTATGT CAGCTGCGGT ATTTACTGTC GGTGAAATCA TTTATGCGCC GGGCGAGTAT
ATGTTGATTG ACCATATTGC GCCGCCAGGA ATGAAAGCCA GCTATTTTTC CGCCCAGTCT
TTAGGCTGGC TTGGTGCCGC GATTAACCCA TTAGTGAGTG GCGTAGTGCT AACCAGCCTG
CCGCCTTCCT CGCTGTTTGT CATCTTAGCG TTGGTGATCA TTGCTGCGTG GGTGCTGATG
TTAAAAGGGA TTCGTGCAAG ACCGTGGGGG CAGCCCGCGC TTTGTTGA
|
|---|
| Protein sequence | MNLSLRRSTS ALLASSLLLT IGRGATLPFM TIYLSRQYSL SVDLIGYAMT IALTISVVFS
LGFGILADKF DKKRYMLLAI TAFASGFIAI PLVNNVKLVV LFFALINCAY SVFATVLKAW
FADNLSSTSK TKIFSINYTM LNIGWTIGPP LGTLLVMQSI NLPFWLAAIC SAFPMLFIQI
WVKRSEKIIA TETGSVWSPK VLLQDKALLW FTCSGFLASF VSGAFASCIS QYVMVIADGD
FAEKVVAVVL PVNAAMVVTL QYSVGRRLNP ANIRALMTAG TLCFVIGLVG FIFSGNSLLL
WGMSAAVFTV GEIIYAPGEY MLIDHIAPPG MKASYFSAQS LGWLGAAINP LVSGVVLTSL
PPSSLFVILA LVIIAAWVLM LKGIRARPWG QPALC
|
|---|
| |