Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcE24377A_0571 |
Symbol | |
ID | 5588457 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli E24377A |
Kingdom | Bacteria |
Replicon accession | NC_009801 |
Strand | + |
Start bp | 593119 |
End bp | 593661 |
Gene Length | 543 bp |
Protein Length | 180 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640924291 |
Product | type-1 fimbrial protein |
Protein accession | YP_001461718 |
Protein GI | 157156301 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3539] P pilus assembly protein, pilin FimA |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.004539 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAATTAA GATTTATTTC GTCTGCGCTG GCTGCCGCAC TATTCGCCGC TACGGGTAGT TATGCTGCCG TTGTAGATGG CGGTACAATT CACTTTGAAG GCGAACTGGT GAATGCTGCC TGTTCAGTGA ATACTGACTC GGCAGACCAG GTTGTCACAC TCGGTCAATA TCGTACCGAT ATTTTCAATG CTGTTGGTAA TACCTCTGCA TTAATTCCAT TCACCATTAA GTTGAACGAC TGCGATCCTG TTGTTGCCGC TAATGCTGCC GTTGCATTTT CTGGTCAGGC TGATGCAATC AATGATAATT TATTGGCCAT TGCATCCAGT ACCAATACAA CAACAGCAAC GGGTGTCGGT ATTGAAATAC TTGATAATAC ATCCGCAATT CTCAAACCTG ATGGGAATAG TTTCTCAACC AACCAGAACT TGATCCCCGG GACCAACGTT CTTCATTTTT CTGCACGTTA TAAAGGCACC GGTACAAGTG CATCAGCAGG GCAAGCAAAT GCTGACGCGA CTTTTATTAT GAGATACGAA TAA
|
Protein sequence | MKLRFISSAL AAALFAATGS YAAVVDGGTI HFEGELVNAA CSVNTDSADQ VVTLGQYRTD IFNAVGNTSA LIPFTIKLND CDPVVAANAA VAFSGQADAI NDNLLAIASS TNTTTATGVG IEILDNTSAI LKPDGNSFST NQNLIPGTNV LHFSARYKGT GTSASAGQAN ADATFIMRYE
|
| |