| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcE24377A_0358 |
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| Symbol | prpD |
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| ID | 5589012 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli E24377A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009801 |
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| Strand | + |
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| Start bp | 386899 |
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| End bp | 388350 |
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| Gene Length | 1452 bp |
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| Protein Length | 483 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640924083 |
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| Product | 2-methylcitrate dehydratase |
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| Protein accession | YP_001461510 |
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| Protein GI | 157158262 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2079] Uncharacterized protein involved in propionate catabolism |
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| TIGRFAM ID | [TIGR02330] 2-methylcitrate dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 40 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAGCTC AAATCAACAA CATCCGCCCG GAATTTGATC GTGAAATCGT TGATATCGTC
GATTACGTCA TGAACTACGA AATCAGTTCT AAAGTGGCCT ACGACACCGC ACATTACTGC
CTGCTCGACA CGCTCGGCTG CGGTCTGGAA GCTCTCGAAT ACCCAGCCTG TAAAAAACTT
CTGGGGCCAA TTGTCCCCGG CACCGTCGTA CCCAACGGCG TGCGCGTCCC CGGAACTCAG
TTTCAGCTCG ACCCTGTCCA GGCGGCATTT AACATTGGCG CGATGATCCG CTGGCTCGAT
TTCAACGATA CCTGGCTGGC GGCGGAGTGG GGGCATCCTT CCGACAACCT CGGCGGCATT
CTGGCAACGG CGGACTGGCT TTCGCGCAAC GCGGTCGCCA GCGGCAAAGC GCCGTTGACC
ATGAAACAGG TGCTGACCGC AATGATCAAA GCCCATGAAA TTCAGGGCTG CATCGCGTTG
GAGAATTCCT TTAACCGCGT CGGCCTCGAC CACGTTCTGT TAGTGAAAGT GGCTTCCACC
GCCGTGGTCG CCGAAATGCT CGGCCTGACC CGCGAGGAAA TTCTCAACGC CGTTTCGCTG
GCGTGGGTGG ACGGTCAGTC GCTGCGCACC TATCGCCATG CGCCGAACAC CGGCACGCGT
AAATCCTGGG CGGCGGGCGA TGCCACTTCC CGCGCGGTAC GTCTGGCACT GATGGCGAAA
ACGGGCGAAA TGGGTTACCC GTCAGCCCTG ACCGCGCCGG TATGGGGCTT CTACGACGTC
TCCTTTAAAG GTGAATCGTT CCGCTTCCAG CGTCCGTACG GTTCTTACGT CATGGAGAAT
GTGCTGTTCA AAATCTCCTT CCCGGCGGAG TTCCACTCCC AGACGGCAGT TGAAGCGGCG
ATGACGCTCT ATGAACAGAT GCAGGCAGCA GGCAAGACGG CGGCGGATAT CGAAAAAGTG
ACCATTCGCA CCCACGAAGC CTGTATTCGC ATCATCGACA AAAAGGGGCC GCTCAATAAC
CCGGCTGACC GCGACCACTG CATTCAGTAC ATGGTGGCGA TCCCGCTGTT ATTCGGGCGC
TTAACGGCGG CAGATTACGA GGACAACGTT GCGCAAGATA AACGCATCGA CGCCCTGCGC
GAGAAGATCA ATTGCTTTGA AGATCCGGCA TTTACCGCTG ACTACCACGA CCCGGAAAAA
CGCGCCATCG CCAATGCCAT TACCCTTGAG TTCACCGACG GCACACGATT TGAAGAAGTG
GTGGTGGAGT ACCCCATTGG TCATGCTCGC CGCCGTCAGG ATGGTATTCC GAAACTGGTC
GATAAATTCA AAATCAATCT CGCGCGCCAG TTCCCGACTC GCCAACAGCA GCGCATTCTG
GAGGTTTCTC TCGACAGAAC TCGCCTGGAA CAGATGCCGG TCAATGAGTA TCTCGACCTG
TACGTCATTT AA
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| Protein sequence | MSAQINNIRP EFDREIVDIV DYVMNYEISS KVAYDTAHYC LLDTLGCGLE ALEYPACKKL
LGPIVPGTVV PNGVRVPGTQ FQLDPVQAAF NIGAMIRWLD FNDTWLAAEW GHPSDNLGGI
LATADWLSRN AVASGKAPLT MKQVLTAMIK AHEIQGCIAL ENSFNRVGLD HVLLVKVAST
AVVAEMLGLT REEILNAVSL AWVDGQSLRT YRHAPNTGTR KSWAAGDATS RAVRLALMAK
TGEMGYPSAL TAPVWGFYDV SFKGESFRFQ RPYGSYVMEN VLFKISFPAE FHSQTAVEAA
MTLYEQMQAA GKTAADIEKV TIRTHEACIR IIDKKGPLNN PADRDHCIQY MVAIPLLFGR
LTAADYEDNV AQDKRIDALR EKINCFEDPA FTADYHDPEK RAIANAITLE FTDGTRFEEV
VVEYPIGHAR RRQDGIPKLV DKFKINLARQ FPTRQQQRIL EVSLDRTRLE QMPVNEYLDL
YVI
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