| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcE24377A_0169 |
|---|
| Symbol | dapD |
|---|
| ID | 5587337 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli E24377A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009801 |
|---|
| Strand | - |
|---|
| Start bp | 185753 |
|---|
| End bp | 186577 |
|---|
| Gene Length | 825 bp |
|---|
| Protein Length | 274 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640923898 |
|---|
| Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
|---|
| Protein accession | YP_001461335 |
|---|
| Protein GI | 157156037 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
|---|
| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCAGT TACAGAACAT TATTGAAACC GCTTTTGAAC GCCGTGCCGA GATCACGCCA
GCCAATGCAG ACACCGTAAC CCGCGAAGCG GTAAATCAGG TGATCGCCCT GCTGGATTCC
GGCGCACTGC GTGTAGCGGA AAAAATTGAC GGTCAGTGGG TGACGCATCA GTGGTTGAAA
AAAGCGGTGC TGCTCTCTTT CCGTATTAAT GATAATCAGG TGATCGAAGG GGCAGAAAGC
CGCTACTTCG ATAAAGTGCC GATGAAATTC GCCGACTACG ACGAAGCGCG TTTTCAGAAA
GAAGGCTTCC GCGTTGTGCC ACCAGCGGCG GTACGTCAGG GTGCATTTAT TGCCCGTAAC
ACCGTGCTGA TGCCGTCTTA CGTCAACATC GGCGCATATG TTGATGAAGG CACGATGGTT
GATACCTGGG CGACCGTCGG TTCTTGTGCG CAGATTGGTA AAAACGTCCA CCTTTCCGGT
GGCGTGGGCA TCGGCGGCGT GCTGGAGCCG CTGCAGGCTA ACCCGACCAT TATTGAAGAT
AACTGCTTCA TTGGCGCACG CTCCGAAGTG GTTGAAGGGG TGATTGTCGA AGAAGGTTCC
GTCATCTCTA TGGGCGTATA CATTGGTCAG AGCACCCGTA TTTACGACCG TGAAACCGGC
GAAATCCACT ACGGTCGCGT TCCGGCGGGG TCTGTGGTTG TTTCAGGTAA TCTGCCGTCG
AAAGATGGCA AATACAGCCT CTACTGTGCG GTTATCGTTA AGAAAGTTGA CGCGAAAACT
CGCGGCAAAG TCGGCATTAA CGAACTGCTG CGTACCATCG ATTAA
|
|---|
| Protein sequence | MQQLQNIIET AFERRAEITP ANADTVTREA VNQVIALLDS GALRVAEKID GQWVTHQWLK
KAVLLSFRIN DNQVIEGAES RYFDKVPMKF ADYDEARFQK EGFRVVPPAA VRQGAFIARN
TVLMPSYVNI GAYVDEGTMV DTWATVGSCA QIGKNVHLSG GVGIGGVLEP LQANPTIIED
NCFIGARSEV VEGVIVEEGS VISMGVYIGQ STRIYDRETG EIHYGRVPAG SVVVSGNLPS
KDGKYSLYCA VIVKKVDAKT RGKVGINELL RTID
|
|---|
| |