Gene EcDH1_4170 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcDH1_4170 
Symbol 
ID
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli DH1 
KingdomBacteria 
Replicon accessionCP001637 
Strand
Start bp4518884 
End bp4519708 
Gene Length825 bp 
Protein Length274 aa 
Translation table11 
GC content55% 
IMG OID 
ProductDiaminopimelate epimerase 
Protein accessionACX41770 
Protein GI260451348 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value0.837067 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGTTCT CGAAAATGCA TGGCCTTGGC AACGATTTTA TGGTCGTCGA CGCGGTAACG 
CAGAATGTCT TTTTTTCACC GGAGCTGATT CGTCGCCTGG CTGATCGGCA CCTGGGGGTA
GGGTTTGACC AACTGCTGGT GGTTGAGCCG CCGTATGATC CTGAACTGGA TTTTCACTAT
CGCATTTTCA ATGCTGATGG CAGTGAAGTG GCGCAGTGCG GCAACGGTGC GCGCTGCTTT
GCCCGTTTTG TGCGTCTGAA AGGACTGACC AATAAGCGTG ATATCCGCGT CAGCACCGCC
AACGGGCGGA TGGTTCTGAC CGTCACCGAT GATGATCTGG TCCGCGTAAA TATGGGCGAA
CCCAACTTCG AACCTTCCGC CGTGCCGTTT CGCGCTAACA AAGCGGAAAA GACCTATATT
ATGCGCGCCG CCGAGCAGAC AATCTTATGC GGCGTGGTGT CGATGGGAAA TCCGCATTGC
GTGATTCAGG TCGATGATGT CGATACCGCG GCGGTAGAAA CGCTTGGTCC TGTTCTGGAA
AGCCACGAGC GTTTTCCGGA GCGCGCCAAT ATCGGTTTTA TGCAAGTGGT TAAGCGCGAG
CATATTCGTT TACGCGTTTA TGAGCGTGGG GCAGGAGAAA CCCAGGCCTG CGGCAGCGGC
GCGTGTGCGG CGGTTGCAGT AGGGATTCAG CAAGGTTTGC TGGCCGAAGA AGTACGCGTG
GAACTCCCCG GCGGTCGTCT TGATATCGCC TGGAAAGGTC CGGGTCACCC GTTATATATG
ACTGGCCCGG CGGTACATGT CTACGACGGA TTTATTCATC TATGA
 
Protein sequence
MQFSKMHGLG NDFMVVDAVT QNVFFSPELI RRLADRHLGV GFDQLLVVEP PYDPELDFHY 
RIFNADGSEV AQCGNGARCF ARFVRLKGLT NKRDIRVSTA NGRMVLTVTD DDLVRVNMGE
PNFEPSAVPF RANKAEKTYI MRAAEQTILC GVVSMGNPHC VIQVDDVDTA AVETLGPVLE
SHERFPERAN IGFMQVVKRE HIRLRVYERG AGETQACGSG ACAAVAVGIQ QGLLAEEVRV
ELPGGRLDIA WKGPGHPLYM TGPAVHVYDG FIHL