| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcDH1_3478 |
|---|
| Symbol | |
|---|
| ID | 0 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli DH1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | CP001637 |
|---|
| Strand | + |
|---|
| Start bp | 3730152 |
|---|
| End bp | 3732542 |
|---|
| Gene Length | 2391 bp |
|---|
| Protein Length | 796 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | |
|---|
| Product | membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family |
|---|
| Protein accession | ACX41093 |
|---|
| Protein GI | 260450671 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAATTA ACAATACAGG CTCGCGACGA TTACTCGTCA CGCTAACAGC CCTTTTTGCA
GCGCTTTGCG GGCTGTATCT ACTCATTGGC GGAGGCTGGC TGGTCGCGAT TGGCGGCTCC
TGGTACTACC CTATCGCTGG CCTTGTGATG CTCGGCGTCG CCTGGATGCT GTGGCGCAGT
AAACGCGCCG CGCTTTGGCT ATACGCAGCC CTGCTGCTCG GCACCATGAT TTGGGGCGTC
TGGGAAGTTG GTTTCGACTT CTGGGCGCTG ACTCCGCGCA GCGACATTCT GGTCTTCTTC
GGCATCTGGC TGATCCTGCC GTTTGTCTGG CGTCGCCTGG TCATTCCTGC CAGCGGCGCA
GTTGCCGCAC TGGTGGTCGC ACTGCTGATT AGCGGTGGTA TCCTGACCTG GGCCGGATTT
AACGATCCGC AGGAGATCAA CGGCACCTTA AGCGCCGATG CCACACCTGC TGAAGCTATC
TCCCCCGTAG CCGATCAGGA CTGGCCTGCC TATGGTCGTA ATCAGGAAGG TCAACGCTTT
TCGCCGCTGA AACAAATTAA CGCCGATAAC GTCCATAATC TGAAAGAAGC CTGGGTGTTC
CGTACTGGCG ATGTGAAGCA GCCGAACGAT CCGGGTGAAA TCACCAATGA AGTGACGCCG
ATTAAAGTGG GCGACACCCT TTACCTGTGT ACCGCTCACC AGCGCCTGTT TGCGCTTGAT
GCCGCCAGCG GCAAAGAGAA ATGGCATTAC GATCCTGAGC TGAAAACCAA CGAGTCTTTC
CAGCACGTAA CCTGCCGTGG TGTCTCTTAT CATGAAGCCA AAGCAGAAAC CGCTTCGCCG
GAAGTGATGG CGGATTGCCC GCGTCGTATC ATTCTTCCGG TCAATGATGG TCGACTGATT
GCGATTAACG CTGAAAACGG CAAACTGTGC GAAACCTTCG CCAATAAAGG CGTGCTCAAT
CTGCAAAGCA ATATGCCAGA CACCAAACCG GGTCTGTATG AACCGACTTC GCCACCGATT
ATCACCGATA AAACCATCGT GATGGCCGGT TCAGTTACCG ATAACTTCTC AACCCGCGAA
ACGTCTGGCG TGATCCGTGG TTTTGATGTC AACACCGGGG AGCTGCTGTG GGCTTTTGAT
CCCGGCGCGA AAGATCCGAA CGCAATCCCG TCTGACGAAC ACACCTTTAC CTTTAACTCG
CCAAACTCCT GGGCACCAGC GGCCTATGAC GCGAAGCTGG ATCTGGTCTA TCTGCCGATG
GGCGTGACCA CGCCGGATAT CTGGGGCGGT AACCGCACAC CGGAACAGGA ACGTTATGCC
AGCTCGATTC TGGCGCTGAA TGCCACTACC GGGAAACTGG CGTGGAGCTA CCAGACCGTT
CACCACGACC TGTGGGACAT GGATCTTCCG GCACAGCCGA CGCTGGCGGA CATCACCGTT
AATGGTCAGA AAGTGCCAGT TATTTACGCT CCGGCGAAAA CCGGCAACAT TTTTGTGCTC
GATCGTCGTA ATGGCGAACT GGTGGTTCCG GCACCGGAAA AACCGGTTCC CCAAGGTGCA
GCGAAAGGCG ATTACGTAAC CCCAACTCAA CCGTTTTCTG AACTGAGCTT CCGTCCGACG
AAAGATTTGA GCGGTGCGGA TATGTGGGGA GCCACCATGT TTGACCAACT GGTGTGCCGC
GTGATGTTCC ACCAGATGCG CTATGAAGGC ATTTTCACCC CGCCATCTGA ACAGGGTACG
CTGGTCTTCC CGGGTAACCT GGGGATGTTC GAATGGGGCG GGATTTCCGT TGATCCAAAT
CGTGAAGTGG CGATTGCCAA CCCAATGGCA CTGCCGTTTG TTTCGAAACT GATCCCGCGT
GGTCCTGGCA ACCCGATGGA GCAGCCGAAA GATGCCAAAG GCACGGGTAC GGAATCCGGC
ATTCAGCCAC AGTACGGTGT ACCGTATGGT GTCACGCTCA ACCCGTTCCT CTCACCATTT
GGTCTGCCAT GTAAACAGCC AGCATGGGGT TATATCTCGG CGCTGGATCT GAAAACTAAT
GAAGTGGTGT GGAAGAAACG TATTGGTACG CCGCAGGACA GTATGCCGTT CCCGATGCCG
GTTCCGGTGC CGTTCAATAT GGGTATGCCG ATGCTGGGCG GGCCAATCTC CACGGCGGGT
AACGTGCTGT TTATCGCCGC TACGGCAGAT AACTACCTGC GCGCTTACAA CATGAGCAAC
GGTGAAAAAC TGTGGCAGGG TCGTTTACCA GCGGGTGGTC AGGCTACGCC AATGACCTAT
GAAGTGAATG GTAAGCAGTA TGTGGTGATC TCCGCAGGCG GTCACGGTTC ATTTGGTACG
AAGATGGGCG ACTATATTGT GGCTTATGCG CTGCCGGATG ATGTGAAGTA A
|
|---|
| Protein sequence | MAINNTGSRR LLVTLTALFA ALCGLYLLIG GGWLVAIGGS WYYPIAGLVM LGVAWMLWRS
KRAALWLYAA LLLGTMIWGV WEVGFDFWAL TPRSDILVFF GIWLILPFVW RRLVIPASGA
VAALVVALLI SGGILTWAGF NDPQEINGTL SADATPAEAI SPVADQDWPA YGRNQEGQRF
SPLKQINADN VHNLKEAWVF RTGDVKQPND PGEITNEVTP IKVGDTLYLC TAHQRLFALD
AASGKEKWHY DPELKTNESF QHVTCRGVSY HEAKAETASP EVMADCPRRI ILPVNDGRLI
AINAENGKLC ETFANKGVLN LQSNMPDTKP GLYEPTSPPI ITDKTIVMAG SVTDNFSTRE
TSGVIRGFDV NTGELLWAFD PGAKDPNAIP SDEHTFTFNS PNSWAPAAYD AKLDLVYLPM
GVTTPDIWGG NRTPEQERYA SSILALNATT GKLAWSYQTV HHDLWDMDLP AQPTLADITV
NGQKVPVIYA PAKTGNIFVL DRRNGELVVP APEKPVPQGA AKGDYVTPTQ PFSELSFRPT
KDLSGADMWG ATMFDQLVCR VMFHQMRYEG IFTPPSEQGT LVFPGNLGMF EWGGISVDPN
REVAIANPMA LPFVSKLIPR GPGNPMEQPK DAKGTGTESG IQPQYGVPYG VTLNPFLSPF
GLPCKQPAWG YISALDLKTN EVVWKKRIGT PQDSMPFPMP VPVPFNMGMP MLGGPISTAG
NVLFIAATAD NYLRAYNMSN GEKLWQGRLP AGGQATPMTY EVNGKQYVVI SAGGHGSFGT
KMGDYIVAYA LPDDVK
|
|---|
| |