| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcDH1_0999 |
|---|
| Symbol | |
|---|
| ID | 0 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli DH1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | CP001637 |
|---|
| Strand | - |
|---|
| Start bp | 1071163 |
|---|
| End bp | 1072335 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | |
|---|
| Product | efflux pump membrane protein |
|---|
| Protein accession | ACX38681 |
|---|
| Protein GI | 260448259 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 0.486081 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCAA ATGCGGAGAC TCAAACCCCG CAGCAACCGG TAAAGAAGAG CGGCAAACGT
AAGCGTCTGC TCCTCCTTCT CACCTTGCTC TTTATAATTA TTGCCGTAGC GATAGGGATT
TATTGGTTTT TGGTACTGCG TCACTTCGAA GAAACCGATG ACGCATACGT GGCAGGGAAT
CAAATTCAAA TTATGTCTCA GGTGTCTGGC AGCGTGACGA AAGTCTGGGC CGATAACACC
GATTTTGTAA AAGAAGGCGA CGTGCTGGTC ACTCTCGACC CGACAGATGC TCGCCAGGCG
TTTGAAAAAG CCAAAACTGC ACTGGCTTCC AGCGTTCGCC AAACCCACCA GCTGATGATT
AACAGCAAGC AGTTGCAGGC GAATATTGAG GTGCAGAAAA TCGCCCTCGC GAAAGCACAA
AGCGACTACA ACCGCCGTGT GCCGCTGGGC AATGCCAACC TGATTGGTCG CGAAGAGCTG
CAACACGCCC GCGACGCCGT CACCAGTGCC CAGGCGCAAC TGGACGTCGC GATTCAACAA
TACAATGCCA ATCAGGCGAT GATTCTGGGG ACTAAACTGG AAGATCAGCC AGCCGTGCAA
CAGGCTGCCA CCGAAGTACG TAACGCCTGG CTGGCGCTGG AGCGTACTCG TATTATCAGT
CCGATGACCG GTTATGTCTC CCGCCGCGCG GTACAGCCTG GGGCGCAAAT TAGCCCAACG
ACGCCGCTGA TGGCGGTCGT TCCAGCCACC AATATGTGGG TGGATGCCAA CTTTAAAGAG
ACGCAGATTG CCAATATGCG TATCGGTCAG CCGGTCACTA TCACCACGGA TATTTACGGC
GATGATGTGA AATACACCGG TAAAGTGGTT GGTCTGGATA TGGGCACAGG TAGCGCGTTC
TCACTGCTTC CAGCGCAAAA TGCGACCGGT AACTGGATCA AAGTCGTTCA GCGTCTGCCT
GTGCGTATCG AACTGGACCA GAAACAGCTG GAGCAATATC CGCTGCGTAT CGGTTTGTCC
ACGCTGGTGA GCGTCAATAC CACTAACCGT GACGGTCAGG TACTGGCAAA TAAAGTACGT
TCCACTCCGG TAGCGGTAAG CACCGCGCGT GAAATCAGCC TGGCACCTGT CAATAAACTG
ATCGACGATA TCGTAAAAGC TAACGCTGGC TAA
|
|---|
| Protein sequence | MSANAETQTP QQPVKKSGKR KRLLLLLTLL FIIIAVAIGI YWFLVLRHFE ETDDAYVAGN
QIQIMSQVSG SVTKVWADNT DFVKEGDVLV TLDPTDARQA FEKAKTALAS SVRQTHQLMI
NSKQLQANIE VQKIALAKAQ SDYNRRVPLG NANLIGREEL QHARDAVTSA QAQLDVAIQQ
YNANQAMILG TKLEDQPAVQ QAATEVRNAW LALERTRIIS PMTGYVSRRA VQPGAQISPT
TPLMAVVPAT NMWVDANFKE TQIANMRIGQ PVTITTDIYG DDVKYTGKVV GLDMGTGSAF
SLLPAQNATG NWIKVVQRLP VRIELDQKQL EQYPLRIGLS TLVSVNTTNR DGQVLANKVR
STPVAVSTAR EISLAPVNKL IDDIVKANAG
|
|---|
| |