| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcDH1_0823 |
|---|
| Symbol | |
|---|
| ID | 0 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli DH1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | CP001637 |
|---|
| Strand | + |
|---|
| Start bp | 877977 |
|---|
| End bp | 879755 |
|---|
| Gene Length | 1779 bp |
|---|
| Protein Length | 592 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | |
|---|
| Product | PAS modulated sigma54 specific transcriptional regulator, Fis family |
|---|
| Protein accession | ACX38507 |
|---|
| Protein GI | 260448085 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGCTTG CTACTACGCA GTCAGTATTG ATGCAAATTC AACCGACAAT TCAGCGTTTT
GCCAGAATGC TTGCCAGCGT TTTGCAGCTT GAGGTTGAGA TCGTTGATGA AAACTTGTGT
CGCGTTGCCG GAACGGGCGC GTATGGGAAG TTTCTTGGTC GCCAGTTGAG CGGCAACTCA
CGCCTGCTCC GCCACGTCCT GGAAACGAAA ACTGAAAAAG TTGTGACACA GTCTCGCTTC
GATCCCCTTT GCGAAGGTTG CGATAGTAAA GAAAATTGCC GCGAAAAAGC ATTTCTGGGT
ACGCCTGTCA TTTTACAGGA TCGTTGTGTT GGGGTGATAA GTTTGATTGC CGTTACCCAC
GAGCAACAAG AGCATATCAG TGATAATTTA CGCGAATTTT CTGATTATGT TCGCCATATA
TCCACCATTT TTGTTTCGAA ACTTCTGGAG GATCAGGGGC CAGGAGATAA CATCAGTAAA
ATATTTGCGA CCATGATCGA TAATATGGAT CAGGGCGTAT TAGTTGTAGA TGATGAAAAT
CGGGTTCAGT TTGTTAATCA GACTGCCTTA AAAACACTTG GTGTTGTGCA AAATAATATT
ATTGGGAAAC CTATCCGTTT CAGACCATTA ACATTTGAGA GTAATTTTAC CCATGGACAT
ATGCAGCATA TTGTTTCATG GGACGATAAA AGTGAATTAA TCATTGGTCA ATTGCATAAC
ATTCAGGGCC GACAATTATT TTTAATGGCG TTTCACCAAT CGCATACCAG TTTTTCTGTA
GCAAATGCAC CTGATGAACC GCATATTGAA CAATTGGTTG GCGAGTGCCG TGTTATGCGG
CAATTAAAAC GACTCATTAG CCGTATTGCA CCCAGCCCAT CCAGCGTTAT GGTGGTTGGT
GAAAGCGGCA CGGGTAAAGA AGTCGTCGCC CGTGCAATCC ATAAGTTGAG CGGAAGACGG
AATAAACCCT TTATTGCTAT CAACTGTGCC GCGATTCCGG AGCAGCTTCT GGAGAGCGAA
CTGTTCGGTT ATGTTAAAGG TGCATTTACT GGCGCTTCTG CCAACGGTAA AACAGGGTTG
ATTCAGGCGG CGAATACGGG CACGCTGTTT CTCGATGAAA TAGGTGATAT GCCATTAATG
TTGCAGGCTA AATTACTGCG CGCTATTGAG GCACGTGAAA TTCTGCCGAT TGGTGCCAGT
AGCCCAATAC AAGTCGACAT TCGCATCATT TCTGCAACTA ATCAGAATTT GGCCCAGTTC
ATTGCCGAAG GTAAATTCCG CGAAGATCTC TTCTACCGAC TTAATGTTAT CCCGATAACT
CTGCCACCGC TGCGTGAACG TCAGGAAGAT ATTGAACTAT TGGTGCATTA CTTTTTACAT
CTGCATACCC GTCGTCTGGG ATCGGTTTAT CCTGGCATTG CTCCCGATGT CGTCGAAATA
TTGCGTAAGC ATCGTTGGCC CGGAAACCTG CGCGAGTTAA GCAATTTGAT GGAATATCTG
GTTAACGTGG TTCCTTCAGG TGAAGTTATC GACAGCACGC TATTGCCGCC AAATCTGCTG
AATAATGGCA CAACGGAGCA AAGTGATGTA ACAGAGGTCA GTGAGGCGCA CCTGTCACTC
GATGATGCGG GCGGCACGGC GCTGGAGGAG ATGGAAAAGC AAATGATCCG CGAGGCGCTT
TCACGTCATA ACAGCAAGAA GCAAGTTGCT GATGAACTGG GCATCGGCAT TGCTACGCTC
TATCGCAAGA TTAAGAAATA TGAGTTGTTA AACACATAA
|
|---|
| Protein sequence | MELATTQSVL MQIQPTIQRF ARMLASVLQL EVEIVDENLC RVAGTGAYGK FLGRQLSGNS
RLLRHVLETK TEKVVTQSRF DPLCEGCDSK ENCREKAFLG TPVILQDRCV GVISLIAVTH
EQQEHISDNL REFSDYVRHI STIFVSKLLE DQGPGDNISK IFATMIDNMD QGVLVVDDEN
RVQFVNQTAL KTLGVVQNNI IGKPIRFRPL TFESNFTHGH MQHIVSWDDK SELIIGQLHN
IQGRQLFLMA FHQSHTSFSV ANAPDEPHIE QLVGECRVMR QLKRLISRIA PSPSSVMVVG
ESGTGKEVVA RAIHKLSGRR NKPFIAINCA AIPEQLLESE LFGYVKGAFT GASANGKTGL
IQAANTGTLF LDEIGDMPLM LQAKLLRAIE AREILPIGAS SPIQVDIRII SATNQNLAQF
IAEGKFREDL FYRLNVIPIT LPPLRERQED IELLVHYFLH LHTRRLGSVY PGIAPDVVEI
LRKHRWPGNL RELSNLMEYL VNVVPSGEVI DSTLLPPNLL NNGTTEQSDV TEVSEAHLSL
DDAGGTALEE MEKQMIREAL SRHNSKKQVA DELGIGIATL YRKIKKYELL NT
|
|---|
| |