Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | ECH74115_B0008 |
Symbol | gspI |
ID | 6966434 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli O157:H7 str. EC4115 |
Kingdom | Bacteria |
Replicon accession | NC_011350 |
Strand | + |
Start bp | 87920 |
End bp | 88285 |
Gene Length | 366 bp |
Protein Length | 121 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643384024 |
Product | general secretion pathway protein I |
Protein accession | YP_002268503 |
Protein GI | 209395599 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
TIGRFAM ID | [TIGR01707] general secretion pathway protein I [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.172677 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGAAGGGGC AAGAAGGAAT GACATTACTG GAAGTCATAG TAGCTCTGGT TGTGTTTGCG CTGGCAGGAA TGGCGCTGAT GCAGGCCTCG ACCCAGCAGG CTGCGGGGAT CGGACGGATG GAAGAGAAGG TGCTGGCAGG CTGGTTGGCC GATAACCAGA TGGTGCAATT GCAACTCGAG AAAACTTGGC CGGAAAATGG CTGGGGCGAG AAGACGATCA GCTTCGCTGG CACCGAATGG TATTTACGCT GGGGCGGGCC GGACAGCGAC GTGCCGCAGC CGCGCTCCTT AGAGGTAGAG GTACGGCGCA CTAAAGAGGA GACGTCCGCC TTGGTTTCCT TGCGTAGCAG TGTGGTTCGT GAATGA
|
Protein sequence | MKGQEGMTLL EVIVALVVFA LAGMALMQAS TQQAAGIGRM EEKVLAGWLA DNQMVQLQLE KTWPENGWGE KTISFAGTEW YLRWGGPDSD VPQPRSLEVE VRRTKEETSA LVSLRSSVVR E
|
| |