| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_B0005 |
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| Symbol | gspF |
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| ID | 6966458 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli O157:H7 str. EC4115 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011350 |
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| Strand | + |
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| Start bp | 85684 |
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| End bp | 86907 |
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| Gene Length | 1224 bp |
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| Protein Length | 407 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643384021 |
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| Product | general secretion pathway protein F |
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| Protein accession | YP_002268500 |
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| Protein GI | 209395613 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | [TIGR02120] general secretion pathway protein F |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.138499 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGTTGT TTCATTATCA GGCATCAGAT ATTCACGGTA GAAAACGCAG TGGCATTCTG
GAGGCGGATT CGGCCCGACA TGCCCGTCAG TTGCTGCGTG AGCAGGCGCT TATTCCAGTC
AGGTTGGATG AGAAACAGGT CCATCACAAG CACTCACTGC GGAGTATCCT GAGGTTTCGT
CCGCGCGGGG GGAGCAGCGC CGAACTCGCG TTACTGACAC GGCAGTTAGC CACACTAGTG
GCCGCATCTC TGCCGCTTGA AGAGGCGCTG GATGCGTTGT TGAGGCAGAG TGAAAAACCG
CGTCAGCGGA ACTTAATCGC TGCCGTGCGC ACCAAGGTTC TCGAGGGACA TTCCTTGGCC
GCGGCGATGG GCATGTTTCC AGGTACGTTT GAGCGTCTTT ATTGTGCGAT GGTGGCGGCG
GGGGAAACAT CCGGTCGTTT GGACGTGGTG CTCAGTCGTC TGGCTGACTA TACCGAGCAG
CGCCAGATCA TGCGAAACCG TCTACTCCAG GCATTGCTCT ATCCTTGTGT TCTGACGTTG
GTGGCGGTTG GGGTTATTGC CATTCTGCTT ACTGCGGTTG TGCCGAAAGT GGTTGAGCAG
TTTATTCATA TGAAACAGAC CCTTCCCTTA TCTACCCGCG TACTGATGGG GGCTGCTGAG
GTGAGCCAGA CTTGGGGCCC GTGGCTGTTA CTGGCCGCAG CGCTGGGCGG GATAGCGGGG
CGCATGATAT TACATCAGCC CTCCCAGCGT CTGGCTTTTC ATCATCTGCT GTTGCGGCTG
CCGGTCGTGG GGCGCATATC GCGCGGTCTG AATACCGCAC GTTATGCCCG CACGCTGAGC
ATTCTTAATG CCAGTGCGGT ACCGCTGCTC CAGGCGATGC ACATCAGTGG TGACGTACTG
AGTAATGACT GGGCCCGTCA TCAGTTAGCT ACCGCGGCCG AGTTGGTTAG GGAAGGGGTC
AGCCTGCATC AGGCACTGGA GCAGACTTCG CTGTTTCCGC CTATGATGCG GCACATGATT
GCCAGCGGTG AAAATAGTGG CGAACTCGAC AGCATGTTGG AACGGGCCGC CGACAATCAG
GATCGTGAGT TCAGCACACA GATGCAACTG GCGCTGGGAT TGTTTGAACC GCTGTTGGTG
GTGGGTATGG CCGGGGTCGT TTTGTTTATT GTTCTGGCAA TTCTGCAGCC GCTCCTGCAG
CTCAACAACA TGATGAATAT GTGA
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| Protein sequence | MALFHYQASD IHGRKRSGIL EADSARHARQ LLREQALIPV RLDEKQVHHK HSLRSILRFR
PRGGSSAELA LLTRQLATLV AASLPLEEAL DALLRQSEKP RQRNLIAAVR TKVLEGHSLA
AAMGMFPGTF ERLYCAMVAA GETSGRLDVV LSRLADYTEQ RQIMRNRLLQ ALLYPCVLTL
VAVGVIAILL TAVVPKVVEQ FIHMKQTLPL STRVLMGAAE VSQTWGPWLL LAAALGGIAG
RMILHQPSQR LAFHHLLLRL PVVGRISRGL NTARYARTLS ILNASAVPLL QAMHISGDVL
SNDWARHQLA TAAELVREGV SLHQALEQTS LFPPMMRHMI ASGENSGELD SMLERAADNQ
DREFSTQMQL ALGLFEPLLV VGMAGVVLFI VLAILQPLLQ LNNMMNM
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