Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | ECH74115_5647 |
Symbol | ldcC2 |
ID | 6969386 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli O157:H7 str. EC4115 |
Kingdom | Bacteria |
Replicon accession | NC_011353 |
Strand | - |
Start bp | 5286120 |
End bp | 5288267 |
Gene Length | 2148 bp |
Protein Length | 715 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 643389281 |
Product | lysine decarboxylase, constitutive |
Protein accession | YP_002273678 |
Protein GI | 209399154 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 54 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGTTA TTGCAATATT GAATCACATG GGGGTTTATT TTAAAGAAGA ACCCATCCGT GAACTTCATC GCGCGCTTGA ACGTCTGAAC TTCCAGATTG TTTACCCGAA CGACCGTGAC GACTTATTAA AACTGATCGA AAACAATGCG CGTCTGTGCG GCGTTATTTT TGACTGGGAT AAATATAATC TCGAGCTGTG CGAAGAAATT AGCAAAATGA ACGAGAACCT GCCGTTGTAC GCGTTCGCTA ATACGTATTC CACTCTCGAT GTAAGCCTGA ATGACCTGCG TTTACAGATT AGCTTCTTTG AATATGCGCT GGGTGCTGCT GAAGATATTG CTAACAAGAT CAAGCAGACC ACTGACGAAT ATATCAACAC TATTCTGCCT CCGCTGACTA AAGCACTGTT TAAATATGTT CGTGAAGGTA AATATACTTT CTGTACTCCT GGTCACATGG GTGGTACTGC ATTCCAGAAA AGCCCGGTAG GTAGCCTGTT CTATGATTTC TTTGGTCCGA ATACCATGAA ATCTGATATT TCCATTTCAG TATCTGAACT GGGTTCTCTG CTGGATCACA GTGGTCCACA CAAAGAAGCA GAACAGTATA TCGCTCGCGT CTTTAACGCA GACCGCAGCT ACATGGTGAC CAACGGTACT TCCACTGCGA ACAAAATTGT TGGTATGTAC TCTGCTCCGG CAGGCAGCAC CATTCTGATT GACCGTAACT GCCACAAATC GCTGACCCAC CTGATGATGA TGAGCGATGT TACGCCAATC TATTTCCGCC CGACCCGTAA CGCTTACGGT ATTCTTGGTG GTATCCCACA GAGTGAATTC CAGCACGCTA CCATTGCTAA GCGCGTGAAA GAAACACCAA ACGCAACCTG GCCGGTACAT GCTGTAATTA CCAACTCTAC CTATGATGGT CTGCTGTACA ACACCGACTT CATCAAGAAA ACACTGGATG TGAAATCCAT CCACTTTGAC TCCGCGTGGG TGCCTTACAC CAACTTCTCA CCGATTTACG AAGGTAAATG CGGTATGAGC GGTGGCCGTG TAGAAGGGAA AGTGATTTAC GAAACCCAGT CCACTCACAA ACTGCTGGCG GCGTTCTCTC AGGCTTCCAT GATCCACGTT AAAGGTGACG TAAACGAAGA AACCTTTAAC GAAGCCTACA TGATGCACAC CACCACTTCT CCGCACTACG GTATCGTGGC GTCCACTGAA ACCGCTGCGG CGATGATGAA AGGCAATGCA GGTAAGCGTC TGATCAACGG TTCCATTGAA CGTGCGATCA AATTCCGTAA AGAGATCAAA CGTCTGAGAA CGGAATCTGA TGGCTGGTTC TTTGATGTAT GGCAGCCGGA TCATATCGAT ACGACTGAAT GCTGGCCGCT GCGTTCTGAC AGCACCTGGC ACGGCTTCAA AAACATCGAT AACGAGCACA TGTATCTTGA CCCGATCAAA GTCACCCTGC TGACTCCGGG GATGGAAAAA GACGGCACCA TGAGCGACTT TGGTATTCCG GCCAGCATCG TGGCGAAATA CCTCGACGAA CATGGCATCG TTGTTGAGAA AACCGGTCCG TATAACCTGC TGTTCCTGTT CAGCATCGGT ATCGATAAGA CCAAAGCACT GAGCCTGCTG CGTGCTCTGA CTGACTTCAA ACGTGCGTTC GACCTGAACC TGCGTGTGAA AAACATGCTG CCGTCTCTGT ATCGTGAAGA TCCTGAATTC TATGAAAACA TGCGTATTCA GGAACTGGCT CAGAATATCC ACAAACTGAT TGTTCACCAC AATCTGCCGG ATCTGATGTA TCGCGCATTT GAAGTGCTGC CGACGATGGT AATGACTCCG TATGCTGCAT TCCAGAAAGA GCTGCACGGT ATGACCGAAG AAGTTTACCT CGACGAAATG GTCGGTCGTA TTAACGCCAA TATGATCCTT CCGTATCCGC CGGGAGTTCC TCTGGTAATG CCGGGTGAAA TGATCACCGA AGAAAGCCGT CCGGTTCTGG AGTTCCTGCA GATGCTGTGT GAAATCGGCG CTCACTATCC GGGCTTTGAA ACCGATATTC ACGGTGCATA CCGTCAGGCT GATGGCCGCT ATACCGTTAA GGTATTGAAA GAAGAAAGCA AAAAATAA
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Protein sequence | MNVIAILNHM GVYFKEEPIR ELHRALERLN FQIVYPNDRD DLLKLIENNA RLCGVIFDWD KYNLELCEEI SKMNENLPLY AFANTYSTLD VSLNDLRLQI SFFEYALGAA EDIANKIKQT TDEYINTILP PLTKALFKYV REGKYTFCTP GHMGGTAFQK SPVGSLFYDF FGPNTMKSDI SISVSELGSL LDHSGPHKEA EQYIARVFNA DRSYMVTNGT STANKIVGMY SAPAGSTILI DRNCHKSLTH LMMMSDVTPI YFRPTRNAYG ILGGIPQSEF QHATIAKRVK ETPNATWPVH AVITNSTYDG LLYNTDFIKK TLDVKSIHFD SAWVPYTNFS PIYEGKCGMS GGRVEGKVIY ETQSTHKLLA AFSQASMIHV KGDVNEETFN EAYMMHTTTS PHYGIVASTE TAAAMMKGNA GKRLINGSIE RAIKFRKEIK RLRTESDGWF FDVWQPDHID TTECWPLRSD STWHGFKNID NEHMYLDPIK VTLLTPGMEK DGTMSDFGIP ASIVAKYLDE HGIVVEKTGP YNLLFLFSIG IDKTKALSLL RALTDFKRAF DLNLRVKNML PSLYREDPEF YENMRIQELA QNIHKLIVHH NLPDLMYRAF EVLPTMVMTP YAAFQKELHG MTEEVYLDEM VGRINANMIL PYPPGVPLVM PGEMITEESR PVLEFLQMLC EIGAHYPGFE TDIHGAYRQA DGRYTVKVLK EESKK
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