Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | ECH74115_5136 |
Symbol | trmE |
ID | 6971346 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli O157:H7 str. EC4115 |
Kingdom | Bacteria |
Replicon accession | NC_011353 |
Strand | + |
Start bp | 4776165 |
End bp | 4777529 |
Gene Length | 1365 bp |
Protein Length | 454 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 643388808 |
Product | tRNA modification GTPase TrmE |
Protein accession | YP_002273234 |
Protein GI | 209395938 |
COG category | [R] General function prediction only |
COG ID | [COG0486] Predicted GTPase |
TIGRFAM ID | [TIGR00231] small GTP-binding protein domain [TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.041745 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 0.0619684 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGATA ATGACACTAT CGTAGCCCAG GCCACGCCTC CGGGACGTGG CGGCGTTGGC ATCCTGCGCA TCTCCGGCTT CAAAGCCCGT GAAGTTGCCG AAACCGTGCT GGGTAAACTG CCTAAGCCGC GCTACGCCGA TTATCTTCCG TTTAAAGACG CCGATGGCAG CGTGCTCGAT CAGGGGATTG CGCTATGGTT CCCTGGCCCG AACTCGTTCA CCGGCGAAGA TGTGCTGGAA CTGCAGGGTC ATGGCGGTCC GGTGATTCTC GACCTGCTGT TAAAACGCAT TCTGACCATT CCCGGCCTGC GGATTGCTCG CCCTGGTGAG TTTTCCGAAC GCGCGTTTCT TAACGATAAA CTCGACTTAG CCCAGGCCGA GGCGATTGCC GATCTTATCG ATGCCAGTTC GGAACAGGCA GCCCGTTCGG CACTTAACTC GCTGCAAGGC GCATTCTCCG CACGGGTCAA CCATCTGGTG GAAGCCCTCA CCCACTTGCG CATTTACGTC GAAGCGGCAA TTGATTTCCC CGATGAAGAG ATCGATTTCC TCTCCGACGG AAAAATTGAA GCCCAGCTTA ATGACGTGAT TGCCGATCTC GATGCAGTGC GTGCTGAAGC ACGTCAGGGT AGTTTGTTGC GCGAAGGGAT GAAGGTGGTG ATTGCCGGAC GTCCTAATGC CGGTAAATCG AGCCTGTTAA ACGCGCTGGC TGGCCGTGAA GCAGCAATCG TAACCGATAT CGCCGGAACC ACGCGTGACG TGTTGCGTGA GCATATCCAC ATTGACGGAA TGCCGCTGCA TATCATCGAC ACCGCCGGGC TACGTGAAGC CAGCGATGAA GTGGAACGTA TTGGTATCGA GCGCGCGTGG CAAGAAATTG AACAAGCCGA CCGCGTGCTG TTTATGGTCG ATGGCACCAC GACAGACGCC GTTGATCCGG CGGAGATCTG GCCGGAATTT ATCGCCCGTC TGCCCGCGAA ACTGCCGATC ACCGTGGTAC GCAATAAAGC CGATATCACT GGCGAAACGC TGGGAATGAG TGAAGTGAAC GGTCATGCGT TGATTCGTCT CTCGGCAAAG ACTGGCGAAG GCGTGGACGT GCTGCGTAAC CATCTCAAAC AGAGCATGGG CTTTGACACC AACATGGAAG GCGGCTTCCT GGCGCGTCGT CGCCACCTTC AGGCGCTGGA ACAGGCAGCG GAGCATTTGC AGCAAGGTAA AGCGCAACTG TTGGGTGCCT GGGCGGGCGA ACTGCTGGCG GAAGAGTTGC GCCTGGCACA GCAGAACTTA AGCGAAATCA CCGGGGAATT TACCTCTGAT GATTTGCTGG GGCGGATTTT CTCCAGCTTC TGTATTGGTA AGTAA
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Protein sequence | MSDNDTIVAQ ATPPGRGGVG ILRISGFKAR EVAETVLGKL PKPRYADYLP FKDADGSVLD QGIALWFPGP NSFTGEDVLE LQGHGGPVIL DLLLKRILTI PGLRIARPGE FSERAFLNDK LDLAQAEAIA DLIDASSEQA ARSALNSLQG AFSARVNHLV EALTHLRIYV EAAIDFPDEE IDFLSDGKIE AQLNDVIADL DAVRAEARQG SLLREGMKVV IAGRPNAGKS SLLNALAGRE AAIVTDIAGT TRDVLREHIH IDGMPLHIID TAGLREASDE VERIGIERAW QEIEQADRVL FMVDGTTTDA VDPAEIWPEF IARLPAKLPI TVVRNKADIT GETLGMSEVN GHALIRLSAK TGEGVDVLRN HLKQSMGFDT NMEGGFLARR RHLQALEQAA EHLQQGKAQL LGAWAGELLA EELRLAQQNL SEITGEFTSD DLLGRIFSSF CIGK
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