| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_4191 |
|---|
| Symbol | |
|---|
| ID | 6971864 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli O157:H7 str. EC4115 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011353 |
|---|
| Strand | - |
|---|
| Start bp | 3884916 |
|---|
| End bp | 3885575 |
|---|
| Gene Length | 660 bp |
|---|
| Protein Length | 219 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 643387935 |
|---|
| Product | channel protein, hemolysin III family |
|---|
| Protein accession | YP_002272374 |
|---|
| Protein GI | 209400695 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1272] Predicted membrane protein, hemolysin III homolog |
|---|
| TIGRFAM ID | [TIGR01065] channel protein, hemolysin III family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 82 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTCAGA AGCCCCTCAT TAAGCAGGGA TATTCGCTGG CAGAGGAAAT TGCCAACAGC
GTCAGTCACG GCATTGGGTT GGTGTTTGGT ATCGTTGGGC TGGTGTTGCT ACTGGTTCAG
GCGGTGGATC TCAATGCCAG CGCCACAGCG ATAACCAGCT ACAGCCTCTA TGGCGGCAGT
ATGATCCTGC TGTTCCTCGC TTCGACGCTC TATCACGCCA TTCCTCATCA ACGGGCAAAA
ATGTGGCTGA AGAAATTTGA CCATTGCGCT ATTTACCTGT TGATTGCCGG AACCTACACG
CCGTTTTTGC TGGTGGGGCT GGATTCTCCG TTAGCGCGCG GGTTGATGAT TGTTATCTGG
AGCCTGGCAT TGCTGGGGAT TCTGTTCAAA CTGACCATCG CGCACCGATT CAAAATTTTA
TCTCTGGTGA CTTATCTGGC GATGGGCTGG CTGTCGCTGG TGGTAATTTA TGAAATGGCA
GTTAAGCTCG CGGCGGGCAG CGTTACCTTA CTGGCGGTAG GCGGCGTGGT TTATTCGCTC
GGGGTGATTT TCTACGTCTG CAAACGCATT CCATACAACC ATGCCATCTG GCACGGCTTC
GTGCTCGGCG GTAGTGTGTG CCACTTTCTG GCGATCTATT TGTATATTGG GCAGGCGTAA
|
|---|
| Protein sequence | MVQKPLIKQG YSLAEEIANS VSHGIGLVFG IVGLVLLLVQ AVDLNASATA ITSYSLYGGS
MILLFLASTL YHAIPHQRAK MWLKKFDHCA IYLLIAGTYT PFLLVGLDSP LARGLMIVIW
SLALLGILFK LTIAHRFKIL SLVTYLAMGW LSLVVIYEMA VKLAAGSVTL LAVGGVVYSL
GVIFYVCKRI PYNHAIWHGF VLGGSVCHFL AIYLYIGQA
|
|---|
| |