Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | ECH74115_3835 |
Symbol | rluD |
ID | 6967818 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli O157:H7 str. EC4115 |
Kingdom | Bacteria |
Replicon accession | NC_011353 |
Strand | - |
Start bp | 3559259 |
End bp | 3560239 |
Gene Length | 981 bp |
Protein Length | 326 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 643387618 |
Product | 23S rRNA pseudouridine synthase D |
Protein accession | YP_002272067 |
Protein GI | 209396635 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0000664381 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 64 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCACAAC GAGTACAGCT CACTGCAACG GTGTCCGAAA ACCAACTCGG TCAACGCTTA GATCAGGCTT TGGCCGAAAT GTTCCCGGAT TATTCACGTT CGCGAATAAA AGAATGGATC CTCGACCAGC GCGTGCTGGT TAACGGCAAA CTTTGTGATA AGCCGAAAGA AAAAGTATTG GGTGGCGAGC AGGTTGCCAT CAACGCTGAG ATTGAAGAAG AAGCGCGTTT TGAACCGCAG GATATCCCGC TGGATATCGT CTATGAAGAT GAAGATATCA TCGTCATTAA TAAACCGCGC GATCTGGTGG TACATCCTGG CGCGGGTAAC CCGGATGGCA CGGTACTGAA TGCGTTACTT CATTACTATC CGCCCATTGC TGATGTACCG CGTGCAGGCA TCGTCCATCG TCTGGATAAA GACACCACTG GCCTGATGGT TGTGGCAAAA ACCGTTCCGG CTCAGACGCG TTTAGTCGAA TCTTTGCAAA GGCGTGAAAT TACTCGTGAG TATGAAGCGG TGGCAATTGG TCATATGACC GCTGGCGGTA CAGTAGATGA ACCAATCAGC CGCCACCCGA CCAAACGTAC TCACATGGCG GTGCATCCGA TGGGCAAACC GGCGGTGACT CACTATCGCA TCATGGAACA CTTCCGTGTG CACACGCGTC TGCGGTTGCG TCTGGAAACT GGACGTACGC ACCAGATCCG CGTGCATATG GCCCATATCA CTCATCCGCT GGTGGGCGAT CCGGTTTATG GTGGCCGTCC GCGCCCGCCA AAAGGTGCTT CGGAAGCGTT TATCTCCACG CTGCGTAAAT TTGACCGCCA GGCGCTTCAT GCAACCATGC TGCGTCTTTA TCACCCGATC TCCGGTATCG AAATGGAATG GCATGCGCCT ATTCCACAAG ATATGGTGGA GCTGATTGAG GTGATGCGCG CCGATTTCGA AGAGCATAAA GATGAAGTGG ACTGGTTATG A
|
Protein sequence | MAQRVQLTAT VSENQLGQRL DQALAEMFPD YSRSRIKEWI LDQRVLVNGK LCDKPKEKVL GGEQVAINAE IEEEARFEPQ DIPLDIVYED EDIIVINKPR DLVVHPGAGN PDGTVLNALL HYYPPIADVP RAGIVHRLDK DTTGLMVVAK TVPAQTRLVE SLQRREITRE YEAVAIGHMT AGGTVDEPIS RHPTKRTHMA VHPMGKPAVT HYRIMEHFRV HTRLRLRLET GRTHQIRVHM AHITHPLVGD PVYGGRPRPP KGASEAFIST LRKFDRQALH ATMLRLYHPI SGIEMEWHAP IPQDMVELIE VMRADFEEHK DEVDWL
|
| |